View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17095_low_12 (Length: 331)
Name: NF17095_low_12
Description: NF17095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17095_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 1904134 - 1903810
Alignment:
| Q |
1 |
caacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaaccg |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1904134 |
caacatgaagagtatcaccaaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgccccctttaaccg |
1904035 |
T |
|
| Q |
101 |
aacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatgtgtcatcaataaattacgattacgaggtgtaaattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |
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| T |
1904034 |
aacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatttgtcatcaataaattacgattacgaggtgcaaactgt |
1903935 |
T |
|
| Q |
201 |
ttagaaatgatagatatttcaacacaaaattgatatcaaaaatcaacaaccactaagatgacacacaatccaaataagtgcttaattacgtccagtgact |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
1903934 |
ttagaaat----gatatttcaacacaaaattgatatcaaaagtcaacaaccaccaagatgacacacaattcaaataagtgtttaattacgtccagtgact |
1903839 |
T |
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| Q |
301 |
gatttgtcaagtgtcacaactcattcatc |
329 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
1903838 |
gatttgtcaagtgtcacaactcattcatc |
1903810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 1908367 - 1908043
Alignment:
| Q |
1 |
caacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaaccg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1908367 |
caacatgaagagtatcaccaaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgccccctttaaccg |
1908268 |
T |
|
| Q |
101 |
aacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatgtgtcatcaataaattacgattacgaggtgtaaattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |
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| T |
1908267 |
aacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatttgtcatcaataaattacgattacgaggtgcaaactgt |
1908168 |
T |
|
| Q |
201 |
ttagaaatgatagatatttcaacacaaaattgatatcaaaaatcaacaaccactaagatgacacacaatccaaataagtgcttaattacgtccagtgact |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
1908167 |
ttagaaat----gatatttcaacacaaaattgatatcaaaagtcaacaaccaccaagatgacacacaattcaaataagtgtttaattacgtccagtgact |
1908072 |
T |
|
| Q |
301 |
gatttgtcaagtgtcacaactcattcatc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
1908071 |
gatttgtcaagtgtcacaactcattcatc |
1908043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 1898929 - 1898780
Alignment:
| Q |
1 |
caacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaaccg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
1898929 |
caacatgaagagtatcaccaagaaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgccccctttaagcg |
1898830 |
T |
|
| Q |
101 |
aacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcct |
150 |
Q |
| |
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||| | ||| |||||||||| | ||||||| |||||||| ||||| |||| |
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| T |
1898829 |
aactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcct |
1898780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 1888367 - 1888222
Alignment:
| Q |
1 |
caacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaaccg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||| || |||||||| || |
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|
| T |
1888367 |
caacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgttacatagacagctccctttaaacg |
1888268 |
T |
|
| Q |
101 |
aacagaccaggcacaaactgtattgcctatcaactttccgaaaatt |
146 |
Q |
| |
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| ||||| ||| ||||| |||| ||||| || ||||| |||||| |
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|
| T |
1888267 |
cattgaccatgcataaactatattccctattaattttcccaaaatt |
1888222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 1893213 - 1893124
Alignment:
| Q |
5 |
atgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctt |
94 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||||||||||| |||||||| |
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| T |
1893213 |
atgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagccccctt |
1893124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 1881067 - 1880971
Alignment:
| Q |
1 |
caacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaa |
97 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | ||| || |||||| |||||||| |||||||||||||||||||||||||| || |||||||| |
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|
| T |
1881067 |
caacatgaagagtatcaccaaggaatataacagccaaggcaacagaaaacacaatttggagtggcttgaatgatgttacatagacagctccctttaa |
1880971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 1914243 - 1914151
Alignment:
| Q |
5 |
atgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaa |
97 |
Q |
| |
|
||||||||||||||||||||| ||||| || || | | |||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
1914243 |
atgaagagtatcaccaaggaatataactcccaaccaaacagagataacaatttgcagtggcttgaatgaggttacatagacagccccctttaa |
1914151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 1898657 - 1898605
Alignment:
| Q |
263 |
acacaatccaaataagtgcttaattacgtccagtgactgatttgtcaagtgtc |
315 |
Q |
| |
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||||||| |||||| |||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
1898657 |
acacaattcaaatatgtgcttaattacgtcccgtgactgatttatcaagtgtc |
1898605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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