View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17095_low_16 (Length: 284)

Name: NF17095_low_16
Description: NF17095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17095_low_16
NF17095_low_16
[»] chr5 (2 HSPs)
chr5 (92-268)||(10521378-10521554)
chr5 (206-268)||(35854619-35854681)
[»] chr8 (2 HSPs)
chr8 (181-252)||(7972057-7972128)
chr8 (183-247)||(7961689-7961753)
[»] chr4 (6 HSPs)
chr4 (210-268)||(54304301-54304359)
chr4 (206-247)||(47293554-47293595)
chr4 (177-268)||(55705958-55706049)
chr4 (206-268)||(45876742-45876804)
chr4 (212-268)||(45858817-45858873)
chr4 (212-268)||(56208543-56208599)
[»] chr2 (1 HSPs)
chr2 (212-247)||(24357553-24357588)


Alignment Details
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 268
Target Start/End: Complemental strand, 10521554 - 10521378
Alignment:
Q  92 gtcctccagtagtttattaagtgattggtgatcttcaacaaaagcatagccaatacctcttgaaagcatgagtagagtaggaccggatcatgagagctcc 191  Q
    |||||| ||||||| ||||||| || || ||||  |||| |  ||||| ||||| || ||| |||| ||| |||||| ||||||||||| |||||||||     
T  10521554 gtcctctagtagttgattaagtaatcggggatcaccaacgagtgcataaccaatgccccttaaaagtatgcgtagagaaggaccggatcttgagagctcg 10521455  T
Q  192 acaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaat 268  Q
    |||| |  ||| | | |||||||||||||||||||||| |||||||| |||||||| ||||  ||||||||||||||    
T  10521454 acaagattaacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaat 10521378  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 35854681 - 35854619
Alignment:
Q  206 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaat 268  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  35854681 tctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaat 35854619  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 7972057 - 7972128
Alignment:
Q  181 atgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcac 252  Q
    |||||||||||||||||  ||| | |||||||||||| | ||||||||||||||||||||||||||| ||||    
T  7972057 atgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcac 7972128  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 7961689 - 7961753
Alignment:
Q  183 gagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaat 247  Q
    |||| ||||||||||  ||| | | |||||||||| |||||||||||||||||||||||||||||    
T  7961689 gagaactccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaat 7961753  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 54304359 - 54304301
Alignment:
Q  210 ttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaat 268  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||    
T  54304359 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaat 54304301  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 47293595 - 47293554
Alignment:
Q  206 tctgttttgaggtatattggccttcaattttgctatagcaat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47293595 tctgttttgaggtatattggccttcaattttgctatagcaat 47293554  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 55706049 - 55705958
Alignment:
Q  177 gatcatgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaat 268  Q
    |||| |||||||||||||| |  ||| | |||||||||||||||||| || ||||||||||  |||||||| ||||  ||||||||||||||    
T  55706049 gatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaat 55705958  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 45876742 - 45876804
Alignment:
Q  206 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaat 268  Q
    ||||| |||||||||||| || |||||||||||||||||||| |||| ||||| |||||||||    
T  45876742 tctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaat 45876804  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 45858817 - 45858873
Alignment:
Q  212 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaat 268  Q
    |||||||||||||||||||||||| ||||||||||| ||||  |||| |||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaat 45858873  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 56208543 - 56208599
Alignment:
Q  212 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaat 268  Q
    ||||||||||   ||||||||||||||||||||||| |||| ||||| |||||||||    
T  56208543 ttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaat 56208599  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 24357588 - 24357553
Alignment:
Q  212 ttgaggtatattggccttcaattttgctatagcaat 247  Q
    |||||||||||||||||||||||||||||| |||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaat 24357553  T

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