View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17095_low_6 (Length: 431)
Name: NF17095_low_6
Description: NF17095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17095_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Original strand, 35732599 - 35733011
Alignment:
| Q |
12 |
agattattctgaacggattaagcatttacatgtttccaaccacaaccacaaatttctatacagattagatatttacaagtttcaatcaaaaacacaattt |
111 |
Q |
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| T |
35732599 |
agattattctgaacggattaagcatttacatgtttccaaccacaaccacaaatttctatacagattagatatttacaagtttcaatcaaaaacacaattt |
35732698 |
T |
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| Q |
112 |
tctacacaaagggaatgtagttcacaatactcttgattacattgcttggagacctgcacacaaaagaaacaaggggagaaatagagaccagtataaccat |
211 |
Q |
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| T |
35732699 |
tctacacaaagggaatgtatttcacaatactcttgattactctgcttggagacctgcacacaaaagaaacaaggggagaaatagagacccgtataaccat |
35732798 |
T |
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| Q |
212 |
tggctggtataaaatcaatatattattgcaaaatataaaataagggaaggattatataccatgaacaagaatcatcctcgagaaagaatgtcaaaatagc |
311 |
Q |
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| T |
35732799 |
tggctggtataaaatcaatatattattgcaaaatataaaataagggaaggattatataccatgaacaacaatcatcctcgagaaagaatgtcaaaatagc |
35732898 |
T |
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| Q |
312 |
aaccatctgccatagcccatatgataatcaatggttaataaacatggaataccgttgaaatttaatatatatattcaaaaattaataagtagcaacaata |
411 |
Q |
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| T |
35732899 |
aaccatctg-------ccatatgataatcaatggttaataaacatggaataccgttgaaatttaatatatatattcaaaaattaataagtagcaacaata |
35732991 |
T |
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| Q |
412 |
ccgcaaggtaaggagcaatc |
431 |
Q |
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| T |
35732992 |
ccgcaaggtaaggagcaatc |
35733011 |
T |
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