View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17095_low_8 (Length: 379)
Name: NF17095_low_8
Description: NF17095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17095_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 1904181 - 1904436
Alignment:
| Q |
12 |
atgaaacattaggaagcaaatatacaaagatcccaccatgttggttcattattgttcggtttaggaaggaaaatctaactgttacaacagttcgataaaa |
111 |
Q |
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| T |
1904181 |
atgaaacattaggaagcaaatatacaaagatcccaccatgtaggttcattattgttcggtttaggaaggaaaatctaactgttacaacagttcgat---- |
1904276 |
T |
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| Q |
112 |
ctcaattgaaccgataatgattcgtttcaaaccaaattgatataaaggtttagtgcactgatcatgtggttttcaaccgagctgaaaatacctttacaaa |
211 |
Q |
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| T |
1904277 |
---------------aatgattcgtttcaaaccaaattgatataaaggtttagtgcactgatcatgtggttttcaaccgagctgaaaatacctttacaaa |
1904361 |
T |
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| Q |
212 |
aaaccgaactgattttttgtggaccgacatgtacgaaattgctatcatcaactaataataagggcttttgaaagc |
286 |
Q |
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| T |
1904362 |
aaaccaaactgattttttgtggaccgacatgtacgaaattgctatcatcaattaataataagggcttttgaaagc |
1904436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 1908414 - 1908669
Alignment:
| Q |
12 |
atgaaacattaggaagcaaatatacaaagatcccaccatgttggttcattattgttcggtttaggaaggaaaatctaactgttacaacagttcgataaaa |
111 |
Q |
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| T |
1908414 |
atgaaacattaggaagcaaatatacaaagatcccaccatgtaggttcattattgttcggtttaggaaggaaaatctaactgttacaacagttcgat---- |
1908509 |
T |
|
| Q |
112 |
ctcaattgaaccgataatgattcgtttcaaaccaaattgatataaaggtttagtgcactgatcatgtggttttcaaccgagctgaaaatacctttacaaa |
211 |
Q |
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| T |
1908510 |
---------------aatgattcgtttcaaaccaaattgatataaaggtttagtgcactgatcatgtggttttcaaccgagctgaaaatacctttacaaa |
1908594 |
T |
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| Q |
212 |
aaaccgaactgattttttgtggaccgacatgtacgaaattgctatcatcaactaataataagggcttttgaaagc |
286 |
Q |
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| T |
1908595 |
aaaccaaactgattttttgtggaccgacatgtacgaaattgctatcatcaattaataataagggcttttgaaagc |
1908669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 197 - 285
Target Start/End: Original strand, 1899206 - 1899295
Alignment:
| Q |
197 |
aaatacctttacaaaaaaccgaactgattttttgtggaccgacatgtacgaaattgctatcatc-aactaataataagggcttttgaaag |
285 |
Q |
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| T |
1899206 |
aaatacctttaacaaaaaccgtattgattttttgtggaccgacatgtacaacattgctatcatcaaaccaataataagggcttttgaaag |
1899295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 1899119 - 1899195
Alignment:
| Q |
159 |
gtttagtgcactgatcatgtggttttcaaccgagctgaaaatacctttac-aaaaaaccgaactgattttttgtgga |
234 |
Q |
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| T |
1899119 |
gtttagtgcaccgattatgtggttttcaaccgagctgaaaatacctttacaaaaaaaccgaactgattctttttgga |
1899195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 1904486 - 1904533
Alignment:
| Q |
316 |
tgaatcacaacgatgataaccgaacttcagttcagttggtgaactatt |
363 |
Q |
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| T |
1904486 |
tgaatcacaacgatgataaccgaacttcaattcagttggtgaactatt |
1904533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 1908719 - 1908766
Alignment:
| Q |
316 |
tgaatcacaacgatgataaccgaacttcagttcagttggtgaactatt |
363 |
Q |
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| T |
1908719 |
tgaatcacaacgatgataaccgaacttcaattcagttggtgaactatt |
1908766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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