View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17096_high_1 (Length: 560)

Name: NF17096_high_1
Description: NF17096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17096_high_1
NF17096_high_1
[»] chr1 (11 HSPs)
chr1 (1-547)||(29443809-29444346)
chr1 (237-547)||(29454043-29454353)
chr1 (49-487)||(29422436-29422877)
chr1 (49-371)||(29468341-29468637)
chr1 (129-199)||(29453922-29453990)
chr1 (405-522)||(29449314-29449431)
chr1 (298-371)||(29473678-29473751)
chr1 (1-49)||(29422909-29422957)
chr1 (16-54)||(29468278-29468316)
chr1 (379-433)||(29462148-29462202)
chr1 (2-54)||(29453784-29453836)
[»] chr2 (28 HSPs)
chr2 (254-544)||(12019598-12019889)
chr2 (237-526)||(12006934-12007224)
chr2 (237-542)||(11988111-11988420)
chr2 (388-522)||(9285032-9285163)
chr2 (2-54)||(12019373-12019425)
chr2 (388-512)||(9318773-9318899)
chr2 (392-524)||(9363686-9363820)
chr2 (402-491)||(9062039-9062127)
chr2 (391-504)||(10334952-10335062)
chr2 (388-512)||(9326637-9326761)
chr2 (2-54)||(9066120-9066172)
chr2 (2-54)||(11987974-11988026)
chr2 (391-491)||(10346940-10347037)
chr2 (45-110)||(9364086-9364151)
chr2 (388-490)||(8574306-8574409)
chr2 (433-511)||(9273277-9273355)
chr2 (453-522)||(11425290-11425359)
chr2 (2-54)||(9291533-9291581)
chr2 (2-54)||(12006580-12006634)
chr2 (453-491)||(9271953-9271991)
chr2 (453-491)||(9291204-9291242)
chr2 (453-491)||(9315312-9315350)
chr2 (2-52)||(9364210-9364260)
chr2 (47-80)||(9274094-9274127)
chr2 (453-522)||(9287804-9287873)
chr2 (47-92)||(10352630-10352675)
chr2 (388-428)||(9068883-9068923)
chr2 (389-504)||(10371054-10371170)
[»] chr8 (1 HSPs)
chr8 (388-522)||(41968243-41968374)
[»] chr3 (2 HSPs)
chr3 (391-506)||(37461624-37461741)
chr3 (2-55)||(37462064-37462113)
[»] scaffold0667 (1 HSPs)
scaffold0667 (395-490)||(1799-1891)


Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 29443809 - 29444346
Alignment:
Q  1 ttttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443809 ttttgaagtctctacctttgtttatgtatgtgtatttgaca---------tgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccc 29443899  T
Q  101 tcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcaggattcctttactttaaaagtaggctaaataaataatatttgtatgagttggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443900 tcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcaggattcctttactttaaaagtaggctaaataaataatatttgtatgagttggta 29443999  T
Q  201 nnnnnnnccgtcattagttgagaatcctcactatgatgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaagga 300  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444000 tttttttccgtcattagttgagaatcctcactatgatgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaagga 29444099  T
Q  301 taaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaaaatatttattttttgatcactattcttttgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444100 taaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaaaatatttattttttgatcactattcttttgt 29444199  T
Q  401 gatattgttgagcttacttctatgagatgcatgtatttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaagggagtgaaggaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29444200 gatattgttgagcttacttctatgagatgcatgtatttttcttatagggataacttcttgtcccaaggatttaaactgaaattgtaagggagtgaaggaa 29444299  T
Q  501 gaacctttgatgcgtagctgaagcaagttgtttctaatgatggattt 547  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29444300 gaacctttgatgcgtagctgaagcaagttgtttctaatgatggattt 29444346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 237 - 547
Target Start/End: Original strand, 29454043 - 29454353
Alignment:
Q  237 tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatga 336  Q
    |||||||||||||||| ||||||||| || ||| ||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29454043 tgtcaaacttatttcggaatgttgagtctattccaccctgttgtggtatctatgtatttaaggataagaacattgttgtgtagaaatttgcctgcaatga 29454142  T
Q  337 atttactcaaaatctatgtataagtcctttcaaaatatttattttttgatcactattcttttgtgatattgttgagcttacttctatgagatgcatgtat 436  Q
    | |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  29454143 aattactcaaaatctatgtacaagtcctttcaaaatatttatttttttatcactattcttttgtgatgttgctgagcttacttctatgagatgcatgtat 29454242  T
Q  437 ttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaagggagtgaaggaagaacctttgatgcgtagctgaagcaagttgtttcta 536  Q
    |||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||    
T  29454243 ttttcttacagggatgacttcttgtcccgaggatttaaattgaaattgtaatggagtgaaggaagaatctttgatgtgtagctgaagcaagttgtttcta 29454342  T
Q  537 atgatggattt 547  Q
     ||||||||||    
T  29454343 gtgatggattt 29454353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 49 - 487
Target Start/End: Complemental strand, 29422877 - 29422436
Alignment:
Q  49 tatgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccctcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcagg 148  Q
    |||||||||||| ||||||||||||||||  |||| ||||||||||| |||||||||||  ||| ||||||||| |||||| || |||||| ||||||||    
T  29422877 tatgctatgtgtaggtttatgagttgacccagtgactagctaaactccaccctcctctc--gagtaaaaaatatcaagttaaaccaaagga-tttgcagg 29422781  T
Q  149 attcctttactttaaaagtaggctaaataaataatatttgtatgagttggtannnnnnnccgtcattagttgagaa-tcctcactatga----------- 236  Q
    |||||||| ||||| ||||| | ||| ||||||||||| ||||||||||||        || |||||||||| ||| ||||  ||||||               
T  29422780 attcctttgctttagaagtatgttaattaaataatattggtatgagttggtctttttttccttcattagttgtgaaatccttgctatgaaataattattt 29422681  T
Q  237 tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatga 336  Q
    |||||||||||||||| |||||||||||| ||||||| |||||| ||||||||||      |||||| |||||||||| |||||||||||||||||||||    
T  29422680 tgtcaaacttatttcggaatgttgagactattcaaccctgtcgtggtatctatgt------ggataagaacattgttgggtagaaatttgcctgcaatga 29422587  T
Q  337 atttactcaaaatctatgtataagtcctttcaaaatatttattttttgatcactattcttttgtgatattgttgagcttacttctatgagatgcatgtat 436  Q
    | |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  29422586 aattactcaaaatctatgtacaagtcctttcaaaatatttatttttttatcactattcttttgtgatgttgctgagcttacttctatgagatgcgtgtat 29422487  T
Q  437 ttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaa 487  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  29422486 ttttcttacagggatgacttcttgtcccgaggatttaaattgaaattgtaa 29422436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 49 - 371
Target Start/End: Original strand, 29468341 - 29468637
Alignment:
Q  49 tatgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccctcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcagg 148  Q
    |||||||||||| |||||||||||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||| ||||||||    
T  29468341 tatgctatgtgtaggtttatgagttgaccttgtgactggctaaactcaaccct---------aggaaaaaatattaagttagacaaaagga-tttgcagg 29468430  T
Q  149 attcctttactttaaaagtaggctaaataaataatatttgtatgagttggtannnnnnnccgtcattagttgagaatcctcactatgatgtcaaacttat 248  Q
    |||||||||||||||| ||||| | | || |||||||| ||||||||||||        || ||||| |||||| |||||||||| ||||||||||||||    
T  29468431 attcctttactttaaatgtaggttgagtatataatattggtatgagttggtctttttttccttcattggttgag-atcctcactacgatgtcaaacttat 29468529  T
Q  249 ttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaa 348  Q
    || ||||         ||||| ||| |||| | | ||||||||      |||||| ||||||||||||||||||||||| ||||||||  ||| || |||    
T  29468530 tttgaaa---------tgttcgaccctgtcatggcatctatgt------ggataagaacattgttgtgtagaaatttgcatgcaatgagattattccaaa 29468614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 29453922 - 29453990
Alignment:
Q  129 agacaaaaggaatttgcaggattcctttactttaaaagtaggctaaataaataatatttgtatgagttggt 199  Q
    ||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||||    
T  29453922 agacaaaagga-tttgcaggattc-tttaatttaaaagtaggttaaataaataatattggtatgagttggt 29453990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 522
Target Start/End: Original strand, 29449314 - 29449431
Alignment:
Q  405 ttgttgagcttacttctatgagatgcatgtatttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaagggagtgaaggaagaac 504  Q
    |||||||| |||||| ||||| || ||||| ||||| ||| | |||| ||||||||| || ||||||||||  || |||||||||||||||| |||||||    
T  29449314 ttgttgagtttacttatatgatattcatgtgttttttttacaaggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaac 29449413  T
Q  505 ctttgatgcgtagctgaa 522  Q
    |  ||||| | |||||||    
T  29449414 cactgatgtgaagctgaa 29449431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 29473678 - 29473751
Alignment:
Q  298 ggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaaaa 371  Q
    |||||| ||||||||||||||||||||||| ||||||||  ||| || |||||||||||||| || ||||||||    
T  29473678 ggataagaacattgttgtgtagaaatttgcatgcaatgagattattccaaatctatgtataattcatttcaaaa 29473751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29422957 - 29422909
Alignment:
Q  1 ttttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgt 49  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  29422957 ttttgaagtctctacctttgtttatgtatatgtatttgacattgtgtgt 29422909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 29468278 - 29468316
Alignment:
Q  16 ctttgtttatgtatgtgtatttgacaatgtgtgtatgct 54  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  29468278 ctttgtttatgtatatgtatttgacaatgtgtgtatgct 29468316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 29462148 - 29462202
Alignment:
Q  379 tttttgatcactattcttttgtgatattgttgagcttacttctatgagatgcatg 433  Q
    ||||| |||||||||||||| |||||||||||| |||||||  ||||||| ||||    
T  29462148 ttttttatcactattcttttatgatattgttgaacttacttacatgagattcatg 29462202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 29453784 - 29453836
Alignment:
Q  2 tttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 54  Q
    ||||||||||||||||  |||||||||| | |||  |||||||||||||||||    
T  29453784 tttgaagtctctacctaagtttatgtatatctatccgacaatgtgtgtatgct 29453836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 254 - 544
Target Start/End: Original strand, 12019598 - 12019889
Alignment:
Q  254 aatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctat 353  Q
    |||||||||||| ||| ||| ||| || |||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||| |||| ||||||||    
T  12019598 aatgttgagactattccaccctgttgtggtatctgtgtatttaaggataagaatattgttgtgtagaaatttacctgcaatgaatt-actccaaatctat 12019696  T
Q  354 gtataagtcctttcaaaatatttatttt-ttgatcactattcttttgtgatattgttgagcttacttctatgagatgcatgta-tttttcttatagggat 451  Q
    |||||| |||||||||||||||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  12019697 gtataattcctttcaaaatatttatattatttatcactattcatttgtgatattgttgagcttacttctatgagatgcatgtacttttttttacagggat 12019796  T
Q  452 aacttcttgtcccgaggatttaaactgaaattgtaagggagtgaaggaagaacctttgatgcgtagctgaagcaagttgtttctaatgatgga 544  Q
     |||||||||||  |||||||||| ||| ||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| |||||||    
T  12019797 gacttcttgtccaaaggatttaaattgacattgtaagggagtgaaggaagaatcgttgatgtgtagctgaagcaagttgtttctagtgatgga 12019889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 237 - 526
Target Start/End: Original strand, 12006934 - 12007224
Alignment:
Q  237 tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatga 336  Q
    ||||||||||||||| ||||||||||| | ||| ||| ||| || |||||| ||||||||||||||| || |||||| ||||||||||| |||  |||||    
T  12006934 tgtcaaacttatttcaaaatgttgagattattccaccctgttgtggtatctgtgtatttaaggataagaatattgttctgtagaaatttacctttaatga 12007033  T
Q  337 atttactcaaaatctatgtataagtcctttcaaaatatttatttt-ttgatcactattcttttgtgatattgttgagcttacttctatgagatgcatgta 435  Q
    | |||||| || ||||||||||| |||||||||||||||||| || || |||||||||| | |||||||||||||||||||||| |||||||||||||||    
T  12007034 aattactccaactctatgtataattcctttcaaaatatttatattatttatcactattcatctgtgatattgttgagcttacttttatgagatgcatgta 12007133  T
Q  436 tttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaagggagtgaaggaagaacctttgatgcgtagctgaagcaa 526  Q
    ||||| ||| |||||  ||||| ||||||||||||||||| |||  ||||||||||||||||||||||||| | ||| |||||||||||||    
T  12007134 ttttttttacagggacgacttcctgtcccgaggatttaaattgaccttgtaagggagtgaaggaagaacctgttatgtgtagctgaagcaa 12007224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 237 - 542
Target Start/End: Original strand, 11988111 - 11988420
Alignment:
Q  237 tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgt-agaaatttgcctgcaatg 335  Q
    |||||||||||||||||||||||| |||| ||| ||| ||| || |||||| |||||  |||||||| ||| ||||||||| |||||||| | |||||||    
T  11988111 tgtcaaacttatttcgaaatgttgtgactattctaccctgttgtggtatctgtgtat--aaggataagaacgttgttgtgttagaaattttcttgcaatg 11988208  T
Q  336 aatttactcaaaatctatgtataagtcct-----ttcaaaatatttattttttgatcactattcttttgtgatattgttgagcttacttctatgagatgc 430  Q
    || | |||| ||||| ||||| || ||||     ||    || ||  |||||| |||| ||||||||||||||||||||||  |||||||| ||||||||    
T  11988209 aaataactccaaatcaatgtacaaatcctaagtattttttattttactttttttatcattattcttttgtgatattgttgaatttacttctgtgagatgc 11988308  T
Q  431 atgtatttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaagggagtgaaggaagaacctttgatgcgtagctgaagcaagttg 530  Q
    |||||||||| ||| |||||| ||||||||||   |||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||||     
T  11988309 atgtattttttttacagggatgacttcttgtcaaaaggatttaaattgacattgtaagggagtgaaggaagaacctttgttgtgtagctgaagcaagttc 11988408  T
Q  531 tttctaatgatg 542  Q
    ||| || |||||    
T  11988409 tttatagtgatg 11988420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 388 - 522
Target Start/End: Original strand, 9285032 - 9285163
Alignment:
Q  388 actattcttttgtgatattgttgagcttacttctatgagatgcatgtatttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaa 487  Q
    ||||||||||||| |||||||||| |||||||  |||||||||||   ||||||| | |||||  ||||||||||| ||||||||||| ||| |||||||    
T  9285032 actattcttttgtaatattgttgaacttactttgatgagatgcat---tttttctcacagggacgacttcttgtccggaggatttaaattgagattgtaa 9285128  T
Q  488 gggagtgaaggaagaacctttgatgcgtagctgaa 522  Q
    ||||  |||||||| |||| ||||| | |||||||    
T  9285129 gggatggaaggaaggacctgtgatgtgcagctgaa 9285163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 12019373 - 12019425
Alignment:
Q  2 tttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 54  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12019373 tttgaagtctctacctttgtttatgtatatgtatttgacaatgtgtgtatgct 12019425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 388 - 512
Target Start/End: Complemental strand, 9318899 - 9318773
Alignment:
Q  388 actattcttttgtgatattgttgagcttacttctatgagatgcatgtatttttctt--atagggataacttcttgtcccgaggatttaaactgaaattgt 485  Q
    |||||| ||||||||||||||||| ||| |||  ||||||| ||| | ||||||||  | |||||  ||||||||||||||||||||||| ||| |||||    
T  9318899 actattattttgtgatattgttgaacttgctttgatgagattcatttttttttcttccacagggacgacttcttgtcccgaggatttaaattgagattgt 9318800  T
Q  486 aagggagtgaaggaagaacctttgatg 512  Q
    ||||||  |||||||| |||| |||||    
T  9318799 aagggatggaaggaaggacctgtgatg 9318773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 524
Target Start/End: Complemental strand, 9363820 - 9363686
Alignment:
Q  392 ttcttttgtgatattgttgagcttacttctatgagatgcatgtatttttctt--atagggataacttcttgtcccgaggatttaaactgaaattgtaagg 489  Q
    ||||||| || |||||||||||||||||||||||| | || || ||||| ||  | |||||| |||||||||||| |||||||||| ||  |||||||||    
T  9363820 ttcttttatgttattgttgagcttacttctatgagtttcacgtgtttttttttcacagggatgacttcttgtcccaaggatttaaattgtcattgtaagg 9363721  T
Q  490 gagtgaaggaagaacctttgatgcgtagctgaagc 524  Q
    ||||||  ||||||||   |||| |||||||||||    
T  9363720 gagtgatagaagaaccagggatgtgtagctgaagc 9363686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 402 - 491
Target Start/End: Original strand, 9062039 - 9062127
Alignment:
Q  402 atattgttgagcttacttctatgagatgcatgtatttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaaggga 491  Q
    |||||||||| |||||||  ||||||| ||| | ||||||| | |||||  |||||||||||||||||||||||||||||||||||||||    
T  9062039 atattgttgaacttactttgatgagattcattt-tttttctcacagggacgacttcttgtcccgaggatttaaactgaaattgtaaggga 9062127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 391 - 504
Target Start/End: Complemental strand, 10335062 - 10334952
Alignment:
Q  391 attcttttgtgatattgttgagcttacttctatgagatgcatgtatttttctt-atagggataacttcttgtcccgaggatttaaactgaaattgtaagg 489  Q
    ||||||||||||||||||||| ||||||| |||||||| |||    ||||||  | |||||| ||||||||||||||||||||||| ||| | |||||||    
T  10335062 attcttttgtgatattgttgaacttacttttatgagattcat----ttttctccacagggatgacttcttgtcccgaggatttaaattgagactgtaagg 10334967  T
Q  490 gagtgaaggaagaac 504  Q
    ||  |||||||||||    
T  10334966 gatggaaggaagaac 10334952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 512
Target Start/End: Complemental strand, 9326761 - 9326637
Alignment:
Q  388 actattcttttgtgatattgttgagcttacttctatgagatgcatgtatttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaa 487  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||  | || ||   | |||||  ||||||||||||||||||||||| |||  ||||||    
T  9326761 actattcttttgtgatattgttgaacttacttcgatgagattcagtttttctttccacagggacgacttcttgtcccgaggatttaaattgaggttgtaa 9326662  T
Q  488 gggagtgaaggaagaacctttgatg 512  Q
    ||||  |||||||| |||| |||||    
T  9326661 gggatagaaggaaggacctgtgatg 9326637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 9066120 - 9066172
Alignment:
Q  2 tttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 54  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  9066120 tttgaagtttctacctttgtttatgtacatgtatttgacaatgtgtgtatgct 9066172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 11987974 - 11988026
Alignment:
Q  2 tttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 54  Q
    |||||||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  11987974 tttgaagtctctacctttgtttatgtatatatatttgacaatgtctgtatgct 11988026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 10347037 - 10346940
Alignment:
Q  391 attcttttgtgatattgttgagcttacttctatgagatgcatgtatttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaaggg 490  Q
    |||||||||| |||||||||| ||||||   |||||||| ||   ||||||  | |||||| ||||||||||||||||||||||| ||| ||||||||||    
T  10347037 attcttttgtcatattgttgaacttactatgatgagatgaat---tttttcccacagggatgacttcttgtcccgaggatttaaattgagattgtaaggg 10346941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 9364151 - 9364086
Alignment:
Q  45 tgtgtatgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccctcctctcttg 110  Q
    |||||||| ||||||| |||||| ||||||||||||||| ||||| || || ||||||||||||||    
T  9364151 tgtgtatgttatgtgtcggtttaagagttgaccttgtgactagctgaagtccaccctcctctcttg 9364086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 490
Target Start/End: Original strand, 8574306 - 8574409
Alignment:
Q  388 actattcttttgtgatattgttgagcttacttctatgagatgcatgtatttttct-tatagggataacttcttgtcccgaggatttaaactgaaattgta 486  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||| | ||||| |  | ||||||  ||||||||||  | |||||||| ||| ||||||    
T  8574306 actattcttttgtgatattgttgaacttacttcgatgagattcatttttttttttccacagggatggcttcttgtcctaaagatttaaattgagattgta 8574405  T
Q  487 aggg 490  Q
    ||||    
T  8574406 aggg 8574409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 511
Target Start/End: Complemental strand, 9273355 - 9273277
Alignment:
Q  433 gtatttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaagggagtgaaggaagaacctttgat 511  Q
    |||||||| ||| |||||  ||||||||||||||||||||||| ||| ||||| |||||  |||||||| |||| ||||    
T  9273355 gtattttttttacagggacgacttcttgtcccgaggatttaaattgagattgtgagggatggaaggaaggacctgtgat 9273277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 522
Target Start/End: Original strand, 11425290 - 11425359
Alignment:
Q  453 acttcttgtcccgaggatttaaactgaaattgtaagggagtgaaggaagaacctttgatgcgtagctgaa 522  Q
    ||||||||||||||||||||||| ||| |||||||||||  |||||| | |||| ||||| | |||||||    
T  11425290 acttcttgtcccgaggatttaaattgacattgtaagggatggaaggatggacctgtgatgtgcagctgaa 11425359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 9291581 - 9291533
Alignment:
Q  2 tttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 54  Q
    |||||||||||||||||||||||||||    ||| ||||||||||||||||||    
T  9291581 tttgaagtctctacctttgtttatgta----tatgtgacaatgtgtgtatgct 9291533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 12006580 - 12006634
Alignment:
Q  2 tttgaagtctctacctttgtttatgtatgt--gtatttgacaatgtgtgtatgct 54  Q
    |||||||||||||||||||||||||||| |  |||||||||  ||||||||||||    
T  12006580 tttgaagtctctacctttgtttatgtatataagtatttgactctgtgtgtatgct 12006634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 491
Target Start/End: Complemental strand, 9271991 - 9271953
Alignment:
Q  453 acttcttgtcccgaggatttaaactgaaattgtaaggga 491  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  9271991 acttcttgtcccgaggatttaaattgagattgtaaggga 9271953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 491
Target Start/End: Complemental strand, 9291242 - 9291204
Alignment:
Q  453 acttcttgtcccgaggatttaaactgaaattgtaaggga 491  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  9291242 acttcttgtcccgaggatttaaattgagattgtaaggga 9291204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 491
Target Start/End: Complemental strand, 9315350 - 9315312
Alignment:
Q  453 acttcttgtcccgaggatttaaactgaaattgtaaggga 491  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  9315350 acttcttgtcccgaggatttaaattgagattgtaaggga 9315312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 9364260 - 9364210
Alignment:
Q  2 tttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatg 52  Q
    |||||||||| ||||||||||||||||| ||||| |||  |||||||||||    
T  9364260 tttgaagtctatacctttgtttatgtatatgtatctgagcatgtgtgtatg 9364210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 9274127 - 9274094
Alignment:
Q  47 tgtatgctatgtgttggtttatgagttgaccttg 80  Q
    ||||||||||||||||||||| ||||||||||||    
T  9274127 tgtatgctatgtgttggtttaagagttgaccttg 9274094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 522
Target Start/End: Complemental strand, 9287873 - 9287804
Alignment:
Q  453 acttcttgtcccgaggatttaaactgaaattgtaagggagtgaaggaagaacctttgatgcgtagctgaa 522  Q
    |||| |||||||||||||||||| ||| |||||||||||  || ||||| |||| ||||| | |||||||    
T  9287873 actttttgtcccgaggatttaaattgagattgtaagggatggatggaagtacctgtgatgtgcagctgaa 9287804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 10352675 - 10352630
Alignment:
Q  47 tgtatgctatgtgttggtttatgagttgaccttgtgaatagctaaa 92  Q
    |||||||||||||||| |||| ||||||||||||||| | ||||||    
T  10352675 tgtatgctatgtgttgttttaggagttgaccttgtgagttgctaaa 10352630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 9068883 - 9068923
Alignment:
Q  388 actattcttttgtgatattgttgagcttacttctatgagat 428  Q
    ||||||||||||||| |||||||| |||||||| |||||||    
T  9068883 actattcttttgtgaaattgttgaacttacttcgatgagat 9068923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 504
Target Start/End: Complemental strand, 10371170 - 10371054
Alignment:
Q  389 ctattcttttgtgatattgttgagcttacttctatgagatgcatgtattttt-cttatagggataacttcttgtcccgaggatttaaactgaaattgtaa 487  Q
    ||||||||||||||| || ||||  ||||||  ||||||| ||| | ||||| |  | |||||  |||| |||||||||||||||||| ||| | |||||    
T  10371170 ctattcttttgtgatgtttttgaagttactttgatgagattcattttttttttcccacagggacgactttttgtcccgaggatttaaattgagactgtaa 10371071  T
Q  488 gggagtgaaggaagaac 504  Q
    ||||  |||||||||||    
T  10371070 gggatggaaggaagaac 10371054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 388 - 522
Target Start/End: Original strand, 41968243 - 41968374
Alignment:
Q  388 actattcttttgtgatattgttgagcttacttctatgagatgcatgtatttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaa 487  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||   |||||   | |||||| |||||||||||| |||||||||| ||| |||||||    
T  41968243 actattcttttgtgatattgttgaacttacttcaatgagattcat---ttttttcgacagggatgacttcttgtcccaaggatttaaattgagattgtaa 41968339  T
Q  488 gggagtgaaggaagaacctttgatgcgtagctgaa 522  Q
    ||||  |||||||| |||| ||||| | |||||||    
T  41968340 gggatggaaggaaggacctgtgatgtgcagctgaa 41968374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 506
Target Start/End: Complemental strand, 37461741 - 37461624
Alignment:
Q  391 attcttttgtgatattgttgagcttacttctatgagatgcatgtatttttcttata--gggataacttcttgtcccgaggatttaaactgaaattgtaag 488  Q
    |||||||| |||||||||||| |||||||  ||||||| ||| | |||||| || |  ||||  ||||||||||| ||||||||||| ||| ||||||||    
T  37461741 attcttttttgatattgttgaacttacttaaatgagattcatttgtttttcctacacagggaccacttcttgtccggaggatttaaattgagattgtaag 37461642  T
Q  489 ggagtgaaggaagaacct 506  Q
    ||   |||||||||||||    
T  37461641 gggtggaaggaagaacct 37461624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 37462113 - 37462064
Alignment:
Q  2 tttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgcta 55  Q
    |||||||||||||||||||||||||||    ||| |||||||||||||||||||    
T  37462113 tttgaagtctctacctttgtttatgta----tatgtgacaatgtgtgtatgcta 37462064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 490
Target Start/End: Complemental strand, 1891 - 1799
Alignment:
Q  395 ttttgtgatattgttgagcttacttctatgagatgcatgtatttttcttatagggataacttcttgtcccgaggatttaaactgaaattgtaaggg 490  Q
    |||||||||||  |||| |||||||| ||||||| |||   |||||  || |||||  ||||||||||| ||||||||||| ||| ||||||||||    
T  1891 ttttgtgatatcattgaacttacttcgatgagattcat---ttttttctacagggacgacttcttgtccggaggatttaaattgagattgtaaggg 1799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University