View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17096_low_4 (Length: 277)

Name: NF17096_low_4
Description: NF17096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17096_low_4
NF17096_low_4
[»] chr8 (1 HSPs)
chr8 (1-277)||(28800546-28800822)
[»] chr5 (3 HSPs)
chr5 (176-263)||(20690315-20690402)
chr5 (188-275)||(17337824-17337910)
chr5 (1-91)||(20690195-20690285)
[»] chr1 (11 HSPs)
chr1 (165-275)||(17087874-17087984)
chr1 (157-253)||(19361806-19361902)
chr1 (157-253)||(19380446-19380542)
chr1 (167-270)||(15440879-15440981)
chr1 (188-263)||(41029561-41029635)
chr1 (20-91)||(1812691-1812762)
chr1 (187-271)||(1812566-1812650)
chr1 (93-163)||(17088001-17088071)
chr1 (1-71)||(19361965-19362035)
chr1 (1-71)||(19380605-19380675)
chr1 (183-271)||(43282237-43282325)
[»] chr4 (2 HSPs)
chr4 (17-91)||(20245487-20245561)
chr4 (208-243)||(18446240-18446275)
[»] chr3 (1 HSPs)
chr3 (177-265)||(5638455-5638543)
[»] chr6 (2 HSPs)
chr6 (183-270)||(26238854-26238941)
chr6 (17-52)||(17291662-17291697)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 28800822 - 28800546
Alignment:
Q  1 tgtactttgttagaggctgaaagcgacccttcttagaagaagacaaagatgatgtggcttctaagtcttcagagcctggataacttagagtttggctgct 100  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28800822 tgtactttgttaggggctgaaagcgaccattcttagaagaagacaaagatgatgtggcttctaagtcttcagagcctggataacttagagtttggctgct 28800723  T
Q  101 aagtcttcagagtgtggataactcagagtctagatgactcggattctggttgacttagagtctagccttcattatcttctgaatgaattcttcacttctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  28800722 aagtcttcagagtgtggataactcagagtctagatgactcggattctggttgacttagagtctggccttcattagcttctgaatgaattcttcacttctg 28800623  T
Q  201 atcacattgttgacttatggttgaccttttttcatatcttctatagagtctttagcttctcttgtacttcaaatgat 277  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28800622 atcacattgttgacttctggttgaccttttttcatatcttctatagagtctttagcttctcttgtacttcaaatgat 28800546  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 20690315 - 20690402
Alignment:
Q  176 cttctgaatgaattcttcacttctgatcacattgttgacttatggttgaccttttttcatatcttctatagagtctttagcttctctt 263  Q
    |||||| || ||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||| |||| |||||||||||||||||    
T  20690315 cttctggattaattcttcacttctgatcacaatgttgacttatgattgacctttcttcaaatcttttataaagtctttagcttctctt 20690402  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 17337910 - 17337824
Alignment:
Q  188 ttcttcacttctgatcacattgttgacttatggttgaccttttttcatatcttctatagagtctttagcttctcttgtacttcaaatg 275  Q
    |||||||||||||||||| |||||||||| |  ||||||||| |||| |||||||||| |||||||||||||| |||||||| |||||    
T  17337910 ttcttcacttctgatcac-ttgttgactttttattgacctttcttcagatcttctataaagtctttagcttcttttgtactttaaatg 17337824  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 20690195 - 20690285
Alignment:
Q  1 tgtactttgttagaggctgaaagcgacccttcttagaagaagacaaagatgatgtggcttctaagtcttcagagcctggataacttagagt 91  Q
    ||||||| ||||||  ||||| |||| | |||| |||||||||||||  ||| ||||||||||| || ||||||  ||||||||| |||||    
T  20690195 tgtacttggttagatcctgaatgcgatctttctcagaagaagacaaaactgacgtggcttctaaatcatcagagattggataactcagagt 20690285  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 275
Target Start/End: Complemental strand, 17087984 - 17087874
Alignment:
Q  165 gccttcattatcttctgaatgaattcttcacttctgatcacattgttgacttatggttgaccttttttcatatcttctatagagtctttagcttctcttg 264  Q
    ||||||| || ||| || ||||||||||| ||||||||||||| |||||||| |||||||||||| |||| |||||||| | ||| ||||||||||||||    
T  17087984 gccttcagtagcttttggatgaattcttcgcttctgatcacatcgttgacttctggttgacctttcttcagatcttctacaaagtatttagcttctcttg 17087885  T
Q  265 tacttcaaatg 275  Q
    |  ||||||||    
T  17087884 tgtttcaaatg 17087874  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 19361902 - 19361806
Alignment:
Q  157 agagtctagccttcattatcttctgaatgaattcttcacttctgatcacattgttgacttatggttgaccttttttcatatcttctatagagtcttt 253  Q
    |||||||| ||||||||| |||||| || ||| |||||||| ||||||||||||||| || || ||||||||| |||| || ||||||| |||||||    
T  19361902 agagtctatccttcattagcttctggataaatccttcacttatgatcacattgttgaattctgattgacctttcttcagatattctataaagtcttt 19361806  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 19380542 - 19380446
Alignment:
Q  157 agagtctagccttcattatcttctgaatgaattcttcacttctgatcacattgttgacttatggttgaccttttttcatatcttctatagagtcttt 253  Q
    |||||||| ||||||||| |||||| || ||| |||||||| ||||||||||||||| || || ||||||||| |||| || ||||||| |||||||    
T  19380542 agagtctatccttcattagcttctggataaatccttcacttatgatcacattgttgaattctgattgacctttcttcagatattctataaagtcttt 19380446  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 270
Target Start/End: Original strand, 15440879 - 15440981
Alignment:
Q  167 cttcattatcttctgaatgaattcttcacttctgatcacattgttgacttatggttgaccttttttcatatcttctatagagtctttagcttctcttgta 266  Q
    ||||| || |||||| |||| |||||||||||||||||  |||||||||| || ||||||||| |||| |||||||||| | | |||||||||||||||     
T  15440879 cttcagtaccttctggatgacttcttcacttctgatcat-ttgttgacttctgattgacctttcttcagatcttctataaattatttagcttctcttgtg 15440977  T
Q  267 cttc 270  Q
    ||||    
T  15440978 cttc 15440981  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 41029561 - 41029635
Alignment:
Q  188 ttcttcacttctgatcacattgttgacttatggttgaccttttttcatatcttctatagagtctttagcttctctt 263  Q
    |||||||||| ||||||  |||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  41029561 ttcttcacttttgatcat-ttgttgacttatgagtgacctttcttcagatcttctatagagtctttagcttctctt 41029635  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 1812762 - 1812691
Alignment:
Q  20 aaagcgacccttcttagaagaagacaaagatgatgtggcttctaagtcttcagagcctggataacttagagt 91  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| |  |||||| ||||| | ||||||||    
T  1812762 aaagcgacccttcatagaagaagacaaagctgatgtggcttctaatttctcagagtctggagagcttagagt 1812691  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 1812650 - 1812566
Alignment:
Q  187 attcttcacttctgatcacattgttgacttatggttgaccttttttcatatcttctatagagtctttagcttctcttgtacttca 271  Q
    ||||||||||||| ||||||||||||| || || |||||||||||||| ||| ||||||   || || ||||||||||| |||||    
T  1812650 attcttcacttctaatcacattgttgatttctgattgaccttttttcaaatcatctatacgatcgtttgcttctcttgtgcttca 1812566  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 17088071 - 17088001
Alignment:
Q  93 tggctgctaagtcttcagagtgtggataactcagagtctagatgactcggattctggttgacttagagtct 163  Q
    ||||| ||||||||||||||| ||||||||||   |||||||| |||| || ||||| ||||| |||||||    
T  17088071 tggcttctaagtcttcagagtatggataactcgtcgtctagataactcagagtctgggtgactaagagtct 17088001  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19362035 - 19361965
Alignment:
Q  1 tgtactttgttagaggctgaaagcgacccttcttagaagaagacaaagatgatgtggcttctaagtcttca 71  Q
    ||||||| ||||||  |||||||||||||||||||| ||||||  ||| ||| ||||||| ||| ||||||    
T  19362035 tgtacttggttagatcctgaaagcgacccttcttaggagaagatgaagctgacgtggcttgtaattcttca 19361965  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19380675 - 19380605
Alignment:
Q  1 tgtactttgttagaggctgaaagcgacccttcttagaagaagacaaagatgatgtggcttctaagtcttca 71  Q
    ||||||| ||||||  |||||||||||||||||||| ||||||  ||| ||| ||||||| ||| ||||||    
T  19380675 tgtacttggttagatcctgaaagcgacccttcttaggagaagatgaagctgacgtggcttgtaattcttca 19380605  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 43282325 - 43282237
Alignment:
Q  183 atgaattcttcacttctgatcacattgttgacttatggttgaccttttttcatatcttctatagagtctttagcttctcttgtacttca 271  Q
    |||| ||||||||||||||||||| ||||||||| | |   |||||| || | |||||||||| ||| | || |||||||||| |||||    
T  43282325 atgagttcttcacttctgatcacaatgttgacttctagcctacctttctttagatcttctataaagtttgtaacttctcttgtgcttca 43282237  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 20245487 - 20245561
Alignment:
Q  17 ctgaaagcgacccttcttagaagaagacaaagatgatgtggcttctaagtcttcagagcctggataacttagagt 91  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| |||||    
T  20245487 ctgaaagtgacccttcttagaagaagacaaatatgatgtggcttctaagtcctcagagtccggataactcagagt 20245561  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 18446240 - 18446275
Alignment:
Q  208 tgttgacttatggttgaccttttttcatatcttcta 243  Q
    ||||||||| ||||||||||||||||||||||||||    
T  18446240 tgttgacttctggttgaccttttttcatatcttcta 18446275  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 265
Target Start/End: Complemental strand, 5638543 - 5638455
Alignment:
Q  177 ttctgaatgaattcttcacttctgatcacattgttgacttatggttgaccttttttcatatcttctatagagtctttagcttctcttgt 265  Q
    ||||| ||| ||||||||||||||||||||||| |||| | |||||||||||| |||||||||||||||   |||||||||||| ||||    
T  5638543 ttctgtatggattcttcacttctgatcacattgatgacctctggttgacctttattcatatcttctataatatctttagcttctattgt 5638455  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 26238854 - 26238941
Alignment:
Q  183 atgaattcttcacttctgatcacattgttgacttatggttgaccttttttcatatcttctatagagtctttagcttctcttgtacttc 270  Q
    ||||||||||||||| |||||||||||||||||| |  ||||||||| || | ||||| |||| | | |||||||||| |||| ||||    
T  26238854 atgaattcttcacttatgatcacattgttgacttctaattgacctttcttaaaatcttttataaattttttagcttcttttgtgcttc 26238941  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 17291662 - 17291697
Alignment:
Q  17 ctgaaagcgacccttcttagaagaagacaaagatga 52  Q
    ||||||||||||||||||| ||||||||||||||||    
T  17291662 ctgaaagcgacccttcttaaaagaagacaaagatga 17291697  T

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