View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17096_low_5 (Length: 236)

Name: NF17096_low_5
Description: NF17096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17096_low_5
NF17096_low_5
[»] chr8 (7 HSPs)
chr8 (1-222)||(28800308-28800530)
chr8 (10-87)||(28890652-28890731)
chr8 (9-89)||(12863765-12863847)
chr8 (10-89)||(7321030-7321111)
chr8 (9-115)||(24308522-24308630)
chr8 (67-115)||(24070727-24070775)
chr8 (12-91)||(24502378-24502459)
[»] chr1 (7 HSPs)
chr1 (3-102)||(34188152-34188253)
chr1 (9-115)||(12398122-12398230)
chr1 (3-91)||(1812452-1812542)
chr1 (3-87)||(31584028-31584114)
chr1 (33-123)||(17087757-17087847)
chr1 (3-89)||(41029667-41029755)
chr1 (67-115)||(17316053-17316101)
[»] chr2 (19 HSPs)
chr2 (3-86)||(22269036-22269120)
chr2 (9-129)||(16586552-16586674)
chr2 (3-55)||(17569247-17569301)
chr2 (36-91)||(42256586-42256641)
chr2 (9-84)||(13074091-13074168)
chr2 (9-85)||(23959730-23959808)
chr2 (29-85)||(45572101-45572157)
chr2 (29-85)||(45575768-45575824)
chr2 (29-85)||(45579435-45579491)
chr2 (29-85)||(45583102-45583158)
chr2 (29-85)||(45586769-45586825)
chr2 (29-85)||(45590436-45590492)
chr2 (29-85)||(45594103-45594159)
chr2 (29-85)||(45597770-45597826)
chr2 (29-85)||(45601437-45601493)
chr2 (29-85)||(45605104-45605160)
chr2 (29-85)||(45608771-45608827)
chr2 (29-85)||(45612438-45612494)
chr2 (29-85)||(45616105-45616161)
[»] chr7 (5 HSPs)
chr7 (29-102)||(12341682-12341755)
chr7 (9-86)||(19143929-19144008)
chr7 (9-86)||(20743328-20743407)
chr7 (3-130)||(956917-957047)
chr7 (67-106)||(24865822-24865861)
[»] chr3 (7 HSPs)
chr3 (4-124)||(24112952-24113075)
chr3 (9-125)||(14426866-14426984)
chr3 (39-93)||(14328696-14328750)
chr3 (9-123)||(4767319-4767435)
chr3 (39-93)||(14332674-14332728)
chr3 (29-102)||(11045004-11045077)
chr3 (43-102)||(10924553-10924613)
[»] scaffold0003 (1 HSPs)
scaffold0003 (8-123)||(319031-319149)
[»] chr6 (7 HSPs)
chr6 (9-88)||(26238972-26239053)
chr6 (36-88)||(29032390-29032442)
chr6 (29-92)||(13487485-13487547)
chr6 (9-93)||(17291880-17291966)
chr6 (31-105)||(6560503-6560577)
chr6 (9-86)||(17146201-17146280)
chr6 (9-94)||(22562376-22562463)
[»] chr4 (5 HSPs)
chr4 (3-87)||(20245715-20245801)
chr4 (29-115)||(8677202-8677288)
chr4 (9-123)||(17473719-17473836)
chr4 (28-86)||(47576017-47576075)
chr4 (75-124)||(12191916-12191964)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28800530 - 28800308
Alignment:
Q  1 aacttgacaaattttaatctatggtcctacacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  28800530 aacttgacaaattttaatctatggtcctacacttaaatatatattagcatatttaacttttattcgatagtttgttatcatcaaaactttaaaagcattg 28800431  T
Q  101 tataaacccattttgcttcaacaacaataagagagtactatatgcgagatat-tggataaaatcatggtgactttccctatacaaagttagcaaatttca 199  Q
    ||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||     
T  28800430 tattaacccattttgtttcaacaacaataagagagtactatatgtgagatatatggataaagtcatggtgactttccctctacaaagttagcaaatttcg 28800331  T
Q  200 ttcacaactggattgcattatat 222  Q
    |||||| ||||||||||||||||    
T  28800330 ttcacacctggattgcattatat 28800308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 28890652 - 28890731
Alignment:
Q  10 aattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaac 87  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||| | || ||  |||||||||||||||||||||    
T  28890652 aattttaatctatggtcctgcacacttaaatatatattagcatatccaattattctttaatactttgttatcatcaaaac 28890731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 12863765 - 12863847
Alignment:
Q  9 aaattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactt 89  Q
    |||||||||| |||||||||  ||||||||| | |||||| ||||| ||| | || ||| |||||||||||||||||||||||    
T  12863765 aaattttaatatatggtcctgcacacttaaacacatattaacatatccaattgttgttcaatactttgttatcatcaaaactt 12863847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 7321111 - 7321030
Alignment:
Q  10 aattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactt 89  Q
    ||||||||||||||||| |  ||||||||| ||||||||||||||  ||   || ||| |||||||||||||||||||||||    
T  7321111 aattttaatctatggtcgtgcacacttaaacatatattagcatataaaatagttcttcaatactttgttatcatcaaaactt 7321030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 24308630 - 24308522
Alignment:
Q  9 aaattttaatctatggtcctac--acttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattgtataaa 106  Q
    |||||||||| ||||||||| |  |||| || |||||||  ||||| ||| |||||||  ||||||||||||||||||||| ||| | | |||||| |||    
T  24308630 aaattttaatttatggtcctgcgcacttgaacatatattcacatatccaatttttatttaatactttgttatcatcaaaaccttagaggaattgtacaaa 24308531  T
Q  107 cccattttg 115  Q
    || ||||||    
T  24308530 ccaattttg 24308522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 24070775 - 24070727
Alignment:
Q  67 atactttgttatcatcaaaactttaaaagcattgtataaacccattttg 115  Q
    ||||||||||||||||||||||||| | |||||| | ||||||||||||    
T  24070775 atactttgttatcatcaaaactttagaggcattgaaaaaacccattttg 24070727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 24502459 - 24502378
Alignment:
Q  12 ttttaatctatggtcctaca--cttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaacttta 91  Q
    |||||||||||||| || ||  ||| ||||||||||||||||| ||| | || ||  ||||||| |||||||||||||||||    
T  24502459 ttttaatctatggtactgcatacttgaatatatattagcatatccaattgttctttaatactttattatcatcaaaacttta 24502378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 34188152 - 34188253
Alignment:
Q  3 cttgacaaattttaatctatggtcctacact--taaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattg 100  Q
    ||||| ||||| |||||||||||||| |||   |||| |||||||||||||||||| | || ||| ||||||||||||||||||||||| ||| ||||||    
T  34188152 cttgataaattataatctatggtcctgcacgcgtaaacatatattagcatattcaattgtttttcaatactttgttatcatcaaaacttcaaaggcattg 34188251  T
Q  101 ta 102  Q
    ||    
T  34188252 ta 34188253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 12398122 - 12398230
Alignment:
Q  9 aaattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattgtataaa 106  Q
    |||||||||||||| ||| |  |||||| || |||||||||||||||||| | || ||| ||||||| ||||||||||||||||| | | |||||| |||    
T  12398122 aaattttaatctatagtcatgcacacttgaacatatattagcatattcaattattcttcaatactttattatcatcaaaactttagaggaattgtacaaa 12398221  T
Q  107 cccattttg 115  Q
    || ||||||    
T  12398222 ccaattttg 12398230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 1812542 - 1812452
Alignment:
Q  3 cttgacaaattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaacttta 91  Q
    ||||| |||||||||| ||||||| |  ||||||||| |||||||||||||||| | | || |||||||||||||||| ||||||| ||||    
T  1812542 cttgataaattttaatttatggtcatgcacacttaaacatatattagcatattcgattgtttttcgatactttgttataatcaaaatttta 1812452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 31584114 - 31584028
Alignment:
Q  3 cttgacaaattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaac 87  Q
    ||||| ||||||||||||||||||||  ||||||||  |  ||||| ||||| ||| | || ||| |||||||||||||||||||||    
T  31584114 cttgataaattttaatctatggtcctgcacacttaagcacgtattaacatatccaattattcttcaatactttgttatcatcaaaac 31584028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 17087847 - 17087757
Alignment:
Q  33 ttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattgtataaacccattttgcttcaaca 123  Q
    ||||| ||||||||||||||   | | || ||| || ||||||| |||||||||||||||| ||| |||| ||||| |||||| |||||||    
T  17087847 ttaaacatatattagcatatctcattgttcttcaatcctttgttttcatcaaaactttaaaggcactgtacaaacctattttgtttcaaca 17087757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 41029667 - 41029755
Alignment:
Q  3 cttgacaaattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactt 89  Q
    ||||| |||||||||| |||| ||||  ||||||||| |||||| ||||||| ||| | || |||  ||||||||||||| ||||||||    
T  41029667 cttgataaattttaatttatgatcctgcacacttaaacatatatcagcatatccaattgttcttcattactttgttatcaacaaaactt 41029755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 17316101 - 17316053
Alignment:
Q  67 atactttgttatcatcaaaactttaaaagcattgtataaacccattttg 115  Q
    ||||||||||||| ||||||| ||||||| |||||| ||||| ||||||    
T  17316101 atactttgttatcgtcaaaaccttaaaagaattgtacaaaccgattttg 17316053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 22269036 - 22269120
Alignment:
Q  3 cttgacaaattttaatctatggtcctacactt-aaatatatattagcatattcaacttttattcgatactttgttatcatcaaaa 86  Q
    ||||| |||||||||||||||||||| || || |||||||||||||||||| ||  |||| |||  |||||||||||||||||||    
T  22269036 cttgataaattttaatctatggtcctgcattttaaatatatattagcatatccattttttcttcattactttgttatcatcaaaa 22269120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 16586674 - 16586552
Alignment:
Q  9 aaattttaatctatggtcctacac--ttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattgtataaa 106  Q
    |||||||||| ||||||||| ||   || || |||||||||||||||||| | || ||  ||||||||||||||||||||  ||| | | ||||||||||    
T  16586674 aaattttaatttatggtcctgcaaatttgaacatatattagcatattcaattcttttttaatactttgttatcatcaaaatcttagaggaattgtataaa 16586575  T
Q  107 cccattttgcttcaacaacaata 129  Q
     | |||||| | |||||||||||    
T  16586574 tcaattttgttccaacaacaata 16586552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17569301 - 17569247
Alignment:
Q  3 cttgacaaattttaatctatggtcctacac--ttaaatatatattagcatattca 55  Q
    ||||| |||||||||||||||||| |||||  ||||| |||||||||||||||||    
T  17569301 cttgataaattttaatctatggtcatacacacttaaacatatattagcatattca 17569247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 42256586 - 42256641
Alignment:
Q  36 aatatatattagcatattcaacttttattcgatactttgttatcatcaaaacttta 91  Q
    ||||||||||||||||| ||| | || ||  |||||||||||||||||||||||||    
T  42256586 aatatatattagcatatccaattgttctttaatactttgttatcatcaaaacttta 42256641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 13074091 - 13074168
Alignment:
Q  9 aaattttaatctatggtcctacac--ttaaatatatattagcatattcaacttttattcgatactttgttatcatcaa 84  Q
    |||||||||||||||||  | |||  ||||| |||||||||||||||||| | || ||  ||||||||||||||||||    
T  13074091 aaattttaatctatggttatgcacatttaaacatatattagcatattcaattgttttttaatactttgttatcatcaa 13074168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 23959730 - 23959808
Alignment:
Q  9 aaattttaatctatggtcct--acacttaaatatatattagcatattcaactt-ttattcgatactttgttatcatcaaa 85  Q
    |||||||||| |||||||||  |||||| || |||||||||||||| ||| || |||||  |||||||||||||||||||    
T  23959730 aaattttaatatatggtcctccacacttgaacatatattagcatat-caagttgttatttaatactttgttatcatcaaa 23959808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45572157 - 45572101
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45572157 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45572101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45575824 - 45575768
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45575824 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45575768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45579491 - 45579435
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45579491 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45579435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45583158 - 45583102
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45583158 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45583102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45586825 - 45586769
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45586825 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45586769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45590492 - 45590436
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45590492 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45590436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45594159 - 45594103
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45594159 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45594103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45597826 - 45597770
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45597826 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45597770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45601493 - 45601437
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45601493 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45601437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45605160 - 45605104
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45605160 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45605104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45608827 - 45608771
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45608827 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45608771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45612494 - 45612438
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45612494 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45612438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45616161 - 45616105
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaa 85  Q
    |||||| |||| |||||||||||| ||| |||| ||| ||| |||||||||||||||    
T  45616161 acacttgaataaatattagcatatccaagttttcttcaatattttgttatcatcaaa 45616105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 12341682 - 12341755
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattgta 102  Q
    ||||||||| |||||||| ||||||||| |||| ||  |||||||||||||||||||| |||| | ||||||||    
T  12341682 acacttaaacatatattaacatattcaatttttctttaatactttgttatcatcaaaattttagaggcattgta 12341755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 19143929 - 19144008
Alignment:
Q  9 aaattttaatctatggtcctacac--ttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaa 86  Q
    |||||||||||||||||||| |||  || || |||||||||||||| ||| | |||||  ||||||||||||||| ||||    
T  19143929 aaattttaatctatggtccttcacaattgaacatatattagcatatccaattgttatttaatactttgttatcataaaaa 19144008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 20743328 - 20743407
Alignment:
Q  9 aaattttaatctatggtcctacac--ttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaa 86  Q
    |||||||||||||||||||| |||  || || |||||||||||||| ||| | |||||  ||||||||||||||| ||||    
T  20743328 aaattttaatctatggtccttcacaattgaacatatattagcatatccaattgttatttaatactttgttatcataaaaa 20743407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 956917 - 957047
Alignment:
Q  3 cttgacaaattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattg 100  Q
    ||||| |||||||||| |||| ||||  ||||||||| ||||| || |||||||||   || |||  |||||||||||||||||||||| | | ||||||    
T  956917 cttgataaattttaatttatgttcctgcacacttaaacatatactaacatattcaatcgttcttcattactttgttatcatcaaaacttcagaggcattg 957016  T
Q  101 tataaa-cccattttgcttcaacaacaataa 130  Q
    || |||  | |||||| ||||||||| ||||    
T  957017 tacaaattcaattttgtttcaacaaccataa 957047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 24865822 - 24865861
Alignment:
Q  67 atactttgttatcatcaaaactttaaaagcattgtataaa 106  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  24865822 atactttgttatcatcaaaactttagaggcattgtataaa 24865861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 24112952 - 24113075
Alignment:
Q  4 ttgacaaattttaatctatggtcctaca--cttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattgt 101  Q
    |||| ||||||||||||||| |||| ||  ||| |||| |||||||||||| | ||| || ||| |||||||| |||||| ||||||||| | |||||||    
T  24112952 ttgataaattttaatctatgatcctgcatgcttgaatacatattagcatatcccactgttcttcaatactttgctatcataaaaactttagaggcattgt 24113051  T
Q  102 ataaa-cccattttgcttcaacaa 124  Q
     ||||  |||||||| ||||||||    
T  24113052 ctaaattccattttgtttcaacaa 24113075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 14426984 - 14426866
Alignment:
Q  9 aaattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattgtataaa 106  Q
    |||||||||||| |||||||  |||||| || |||||||||||||| ||| | || ||  ||||||||||||||||||||  ||| | | |||||| |||    
T  14426984 aaattttaatctttggtcctgcacacttgaacatatattagcatatccaattgttctttaatactttgttatcatcaaaatcttagaggaattgtacaaa 14426885  T
Q  107 cccattttgcttcaacaac 125  Q
    || |||||| | |||||||    
T  14426884 ccaattttgttccaacaac 14426866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 14328696 - 14328750
Alignment:
Q  39 atatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaa 93  Q
    |||||||||||||| ||||| || ||| |||||||||||||||||||||| ||||    
T  14328696 atatattagcatatccaactgttcttcaatactttgttatcatcaaaactctaaa 14328750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 4767435 - 4767319
Alignment:
Q  9 aaattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattgtataaa 106  Q
    |||||| ||||||| |||||  |||||| || ||||||||||||||  || | || ||  ||||||||||||||||||||| ||| | | |||||| |||    
T  4767435 aaatttaaatctatcgtcctgcacacttgaacatatattagcatatctaattattctttaatactttgttatcatcaaaaccttagaggaattgtacaaa 4767336  T
Q  107 cccattttgcttcaaca 123  Q
    || |||||| |||||||    
T  4767335 ccaattttgtttcaaca 4767319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 14332674 - 14332728
Alignment:
Q  39 atatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaa 93  Q
    |||||||||||||| ||||| || ||| |||||||||||| ||||||||| ||||    
T  14332674 atatattagcatatccaactgttcttcaatactttgttataatcaaaactctaaa 14332728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 11045004 - 11045077
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattgta 102  Q
    ||||||||| ||||||||||||||   | | || ||| |||||||||||||||||||| |||| || |||||||    
T  11045004 acacttaaacatatattagcatatctcattgttcttcaatactttgttatcatcaaaattttataaacattgta 11045077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 10924553 - 10924613
Alignment:
Q  43 attagcatattcaacttttattcgatact-ttgttatcatcaaaactttaaaagcattgta 102  Q
    |||||||||||||| || ||||  ||||| ||||||||||||||| ||||||| |||||||    
T  10924553 attagcatattcaatttatattttatactcttgttatcatcaaaattttaaaaacattgta 10924613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 319149 - 319031
Alignment:
Q  8 caaattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattgta-ta 104  Q
    ||||||||||| |||| ||||  |||||| || | |||||| |||||  || | || ||| ||||||||||||||||||||||||||| ||||||||  |    
T  319149 caaattttaatttatgatcctgcacacttgaacacatattaacatatctaattgtttttcaatactttgttatcatcaaaactttaaaggcattgtacaa 319050  T
Q  105 aacccattttgcttcaaca 123  Q
    ||||||||||  |||||||    
T  319049 aacccatttttattcaaca 319031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 26238972 - 26239053
Alignment:
Q  9 aaattttaatctatggtcctaca--cttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaact 88  Q
    |||||||||| ||||||| | ||  |||||| |||||||||||||| ||| | || ||| ||||||||||||||||||||||    
T  26238972 aaattttaatttatggtcatgcatgcttaaaaatatattagcatatccaattgttcttcaatactttgttatcatcaaaact 26239053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 29032390 - 29032442
Alignment:
Q  36 aatatatattagcatattcaacttttattcgatactttgttatcatcaaaact 88  Q
    ||||||||||||||||||||| | || ||  ||||||||||||||||||||||    
T  29032390 aatatatattagcatattcaattgttctttaatactttgttatcatcaaaact 29032442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 13487547 - 13487485
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaa 92  Q
    |||||| ||||||||||||||||||||||| ||  |  ||||||| ||||||||||||||||||    
T  13487547 acacttgaatatatattagcatattcaactattccttaatacttt-ttatcatcaaaactttaa 13487485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 17291880 - 17291966
Alignment:
Q  9 aaattttaatctatggtcctacac--ttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaa 93  Q
    ||||||||||||||| || |||||  ||||| |||||||||||||||||| | || ||  | | |||||||||||||||| ||||||    
T  17291880 aaattttaatctatgatcttacacacttaaacatatattagcatattcaattattctttaagattttgttatcatcaaaattttaaa 17291966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 6560577 - 6560503
Alignment:
Q  31 acttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattgtataa 105  Q
    ||||||| |||||||| ||||||| | |||| |||   ||||||||||||||||||||||| |  ||||||||||    
T  6560577 acttaaacatatattaccatattcgatttttcttcatcactttgttatcatcaaaactttagagacattgtataa 6560503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 17146280 - 17146201
Alignment:
Q  9 aaattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaa 86  Q
    |||||||||| |||| ||||  |||||||||||||||||||||||| ||| | || ||   |||||||||||||| ||||    
T  17146280 aaattttaatatatgatcctgcacacttaaatatatattagcatatacaattgttctttagtactttgttatcataaaaa 17146201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 22562463 - 22562376
Alignment:
Q  9 aaattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaa 94  Q
    |||||||||||||| |||||  |||||| || ||||||| |||||| ||| |||| ||  |||||||||||| ||||| || ||||||    
T  22562463 aaattttaatctatagtcctgcacacttgaacatatattcgcatatccaatttttctttaatactttgttataatcaataccttaaaa 22562376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 20245715 - 20245801
Alignment:
Q  3 cttgacaaattttaatctatggtcctaca--cttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaac 87  Q
    ||||| |||||||| || || ||||||||  |||||| ||||| |||||||| ||| | || ||| |||||||||||||||||||||    
T  20245715 cttgataaattttagtccatagtcctacaaacttaaacatatactagcatatccaattgttcttcaatactttgttatcatcaaaac 20245801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 8677288 - 8677202
Alignment:
Q  29 acacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaactttaaaagcattgtataaacccattttg 115  Q
    |||||| || |||||||| ||||||||| | || ||  |||||||||||||||||||||| || | | |||||| ||||| ||||||    
T  8677288 acacttgaacatatattaacatattcaattgttttttaatactttgttatcatcaaaactctagaggaattgtacaaaccaattttg 8677202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 17473836 - 17473719
Alignment:
Q  9 aaattttaatctatggtcct--acacttaaatatatattagcatattcaacttttattcgatactttg-ttatcatcaaaactttaaaagcattgtataa 105  Q
    |||||||||| |||| ||||  |||||| || |||||||| |||||| || |||| ||  |||||||  ||||||||||||||||| |||  ||||| ||    
T  17473836 aaattttaatttatgttcctgcacacttgaacatatattaacatatttaatttttctttaatacttttattatcatcaaaactttagaagatttgtacaa 17473737  T
Q  106 acccattttgcttcaaca 123  Q
    ||| |||||| |||||||    
T  17473736 accaattttgtttcaaca 17473719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 47576017 - 47576075
Alignment:
Q  28 tacacttaaatatatattagcatattcaacttttattcgatactttgttatcatcaaaa 86  Q
    ||||||| || |||||||||||||||||| | || ||  ||||||||||||||||||||    
T  47576017 tacacttgaacatatattagcatattcaagtgttctttaatactttgttatcatcaaaa 47576075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 12191916 - 12191964
Alignment:
Q  75 ttatcatcaaaactttaaaagcattgtataaacccattttgcttcaacaa 124  Q
    ||||||||||||||| | || |||||||||||||||||||| ||||||||    
T  12191916 ttatcatcaaaacttcataaacattgtataaacccattttg-ttcaacaa 12191964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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