View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17097_low_2 (Length: 321)

Name: NF17097_low_2
Description: NF17097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17097_low_2
NF17097_low_2
[»] chr7 (15 HSPs)
chr7 (4-300)||(31184323-31184620)
chr7 (4-300)||(31103243-31103540)
chr7 (5-301)||(31058800-31059097)
chr7 (5-297)||(31140603-31140896)
chr7 (114-297)||(31159545-31159728)
chr7 (131-297)||(31241665-31241831)
chr7 (59-273)||(31216089-31216303)
chr7 (147-261)||(14606660-14606774)
chr7 (147-261)||(16025837-16025951)
chr7 (156-261)||(15676319-15676424)
chr7 (147-261)||(15664484-15664598)
chr7 (147-261)||(16173313-16173427)
chr7 (146-261)||(17849283-17849398)
chr7 (147-261)||(16103645-16103759)
chr7 (147-261)||(17825340-17825454)
[»] scaffold0289 (2 HSPs)
scaffold0289 (147-261)||(4810-4924)
scaffold0289 (147-261)||(13643-13757)
[»] chr1 (7 HSPs)
chr1 (157-271)||(15002873-15002987)
chr1 (157-271)||(14531977-14532091)
chr1 (157-271)||(15011766-15011880)
chr1 (186-264)||(14504777-14504855)
chr1 (157-271)||(15017881-15017995)
chr1 (218-271)||(14521856-14521909)
chr1 (157-258)||(15033218-15033319)
[»] scaffold0400 (2 HSPs)
scaffold0400 (186-271)||(7283-7368)
scaffold0400 (157-271)||(13554-13668)
[»] scaffold0365 (2 HSPs)
scaffold0365 (186-271)||(7927-8012)
scaffold0365 (157-271)||(14197-14311)
[»] chr8 (2 HSPs)
chr8 (224-271)||(17028673-17028720)
chr8 (224-271)||(17559109-17559156)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 300
Target Start/End: Original strand, 31184323 - 31184620
Alignment:
Q  4 cgagtgagat-gaaacattgagaggaatcaaacacaggaacatcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagtt 102  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31184323 cgagtgagattgaaacattgagaggaatcaaacacaggaacatcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagtt 31184422  T
Q  103 catggaaggtggaagcttagatcaaatactaaacaatgaaaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaat 202  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31184423 catggaaggtggaagcttagatcaaataataaacaatgaaaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgtcgccaat 31184522  T
Q  203 gctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatatatcaagtaaaaatgttctaatcaatcttgactatgaagctcatgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  31184523 gctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatatatcgagtaaaaatgttcttatcaatcttgactatgaagctcatgt 31184620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 300
Target Start/End: Original strand, 31103243 - 31103540
Alignment:
Q  4 cgagtgagat-gaaacattgagaggaatcaaacacaggaacatcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagtt 102  Q
    |||||||||| ||||| |||| |||||||||||||||||| ||||| || ||||| |||| ||||  ||||||||||||||||||||| |||||||||||    
T  31103243 cgagtgagattgaaaccttgacaggaatcaaacacaggaatatcataaagcttcatggattttgctcacattctaagttctcatttttagtttacaagtt 31103342  T
Q  103 catggaaggtggaagcttagatcaaatactaaacaatgaaaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31103343 catggaaggtggaagcttagatcaaatactaaacaatgaaaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgtcgccaat 31103442  T
Q  203 gctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatatatcaagtaaaaatgttctaatcaatcttgactatgaagctcatgt 300  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| || || ||| ||||  |||||||||||||||||||||||||    
T  31103443 gctttgtcctacttgcatcatgattgctcacctcctattattcatcgtgatatatcgagcaagaatattcttctcaatcttgactatgaagctcatgt 31103540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 301
Target Start/End: Original strand, 31058800 - 31059097
Alignment:
Q  5 gagtgagat-gaaacattgagaggaatcaaacacaggaacatcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagttc 103  Q
    ||||||||| ||||| |||| |||||| ||||| ||||||||||| || ||||| |||| ||||  ||||||||| ||||| ||||||||||||||||||    
T  31058800 gagtgagattgaaaccttgacaggaattaaacataggaacatcataaaacttcatggattttgctcacattctaaattctcgtttttggtttacaagttc 31058899  T
Q  104 atggaaggtggaagcttagatcaaatactaaacaatgaaaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatg 203  Q
     ||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31058900 ttggaaggtggaagcttagatcaaatactaaacaatgacacacaagccgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatg 31058999  T
Q  204 ctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatatatcaagtaaaaatgttctaatcaatcttgactatgaagctcatgtt 301  Q
    ||||||||||||||||||| |||||||| ||||||||  ||||||| ||||||||||| || ||||||||  | ||||||||||||||||||||||||    
T  31059000 ctttgtcctacttgcatcatgattgctcgcctcctataattcatcgcgatatatcaagcaagaatgttcttcttaatcttgactatgaagctcatgtt 31059097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 5 - 297
Target Start/End: Original strand, 31140603 - 31140896
Alignment:
Q  5 gagtgagat-gaaacattgagaggaatcaaacacaggaacatcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagttc 103  Q
    ||||||||| ||||| |||  |||||||| ||||||||||||||| || ||||| |||| ||||  ||||||||| ||||||||||||||||||||||||    
T  31140603 gagtgagattgaaaccttgtcaggaatcagacacaggaacatcataaagcttcatggattttgctcacattctaaattctcatttttggtttacaagttc 31140702  T
Q  104 atggaaggtggaagcttagatcaaatactaaacaatgaaaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatg 203  Q
     ||||||| |||||||||| |||||| ||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31140703 ttggaaggaggaagcttaggtcaaatgctaaacagtgatacacaagccactgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatg 31140802  T
Q  204 ctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatatatcaagtaaaaatgttctaatcaatcttgactatgaagctca 297  Q
    ||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||| || ||||| ||  | ||||||||||||||||||||    
T  31140803 ctttgtcctacttgcatcatgattgttctcctcctattattcatcgtgatatatcaagcaagaatgtccttcttaatcttgactatgaagctca 31140896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 114 - 297
Target Start/End: Original strand, 31159545 - 31159728
Alignment:
Q  114 gaagcttagatcaaatactaaacaatgaaaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtccta 213  Q
    ||||||||| |||||| ||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31159545 gaagcttaggtcaaatgctaaacagtgatacacaagccactgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtccta 31159644  T
Q  214 cttgcatcacgattgctcacctcctattgttcatcgtgatatatcaagtaaaaatgttctaatcaatcttgactatgaagctca 297  Q
    ||||||||| ||||| || |||||||||||||||||||||||||| || || ||||| ||  | ||||||||||||||||||||    
T  31159645 cttgcatcatgattgttctcctcctattgttcatcgtgatatatcgagcaagaatgtccttcttaatcttgactatgaagctca 31159728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 131 - 297
Target Start/End: Original strand, 31241665 - 31241831
Alignment:
Q  131 ctaaacaatgaaaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgct 230  Q
    ||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |    
T  31241665 ctaaacagtgatacacaagccactgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgtt 31241764  T
Q  231 cacctcctattgttcatcgtgatatatcaagtaaaaatgttctaatcaatcttgactatgaagctca 297  Q
    | |||||||||||||||||||||||||| || || ||||| ||  | ||||||||||||||||||||    
T  31241765 ctcctcctattgttcatcgtgatatatcgagcaagaatgtccttcttaatcttgactatgaagctca 31241831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 59 - 273
Target Start/End: Original strand, 31216089 - 31216303
Alignment:
Q  59 ggatattgccaacattctaagttctcatttttggtttacaagttcatggaaggtggaagcttaga-tcaaatactaaacaatgaaaaacaagccattgca 157  Q
    |||||||||| |||||| |  ||||||||||||||||| |||||| |||||||||||| ||| || ||||||  |||||||||| | |||||||||||||    
T  31216089 ggatattgccgacattcaagattctcatttttggtttataagttcttggaaggtggaa-ctttgactcaaatgttaaacaatgacacacaagccattgca 31216187  T
Q  158 tttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatatat 257  Q
    |||||||||||||||||||||||| |||||| |||||| ||  |||||||||||||| ||||||| || |||  |||||| || ||||| ||||| ||||    
T  31216188 tttgattgggaaaagagggtgaatattgttagaggtgtggctgatgctttgtcctacatgcatcatgactgcatacctccaatagttcaccgtgacatat 31216287  T
Q  258 caagtaaaaatgttct 273  Q
    |||| || ||||||||    
T  31216288 caagcaagaatgttct 31216303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 14606660 - 14606774
Alignment:
Q  147 aagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttca 246  Q
    |||| ||||||||||||||| | ||||||||||||||  |||||| ||| ||||||||||| | |||| ||||||| |||||||| ||||| ||||||||    
T  14606660 aagcaattgcatttgattggaataagagggtgaatgtcattaaagatgtagccaatgctttatgctacatgcatcatgattgctcgcctccaattgttca 14606759  T
Q  247 tcgtgatatatcaag 261  Q
    ||| |||||||||||    
T  14606760 tcgagatatatcaag 14606774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 16025837 - 16025951
Alignment:
Q  147 aagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttca 246  Q
    |||| ||||||||||||||| | ||||||||||||||  |||||| ||| ||||||||||| | |||| ||||||| |||||||| ||||| ||||||||    
T  16025837 aagcaattgcatttgattggaataagagggtgaatgtcattaaagatgtagccaatgctttatgctacatgcatcatgattgctcgcctccaattgttca 16025936  T
Q  247 tcgtgatatatcaag 261  Q
    ||| |||||||||||    
T  16025937 tcgagatatatcaag 16025951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 15676424 - 15676319
Alignment:
Q  156 catttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatat 255  Q
    ||||||||||| | ||| ||||||||||| |||||| ||| || |||||||| | |||  |||| || |||||||||||||| ||||||||||| |||||    
T  15676424 catttgattggaataagcgggtgaatgttattaaagatgtagctaatgctttatactatatgcaccatgattgctcacctccaattgttcatcgagatat 15676325  T
Q  256 atcaag 261  Q
    ||||||    
T  15676324 atcaag 15676319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 15664598 - 15664484
Alignment:
Q  147 aagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttca 246  Q
    |||| |||||||||| |||| ||||||||||||||||| |||||| | | || |||||||| | |||  |||| || |||||| | ||||| ||||||||    
T  15664598 aagcaattgcatttggttggaaaaagagggtgaatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttca 15664499  T
Q  247 tcgtgatatatcaag 261  Q
    ||| |||||||||||    
T  15664498 tcgagatatatcaag 15664484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 16173313 - 16173427
Alignment:
Q  147 aagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttca 246  Q
    |||| ||||||||| ||||| ||||| ||||||||||  |||||| ||| || |||||||| | |||  |||| || |||||||| ||||| ||||||||    
T  16173313 aagcaattgcatttaattggaaaaagcgggtgaatgtcattaaagatgtagctaatgctttatgctatatgcaccatgattgctcgcctccaattgttca 16173412  T
Q  247 tcgtgatatatcaag 261  Q
    ||| |||||||||||    
T  16173413 tcgagatatatcaag 16173427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 17849283 - 17849398
Alignment:
Q  146 caagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttc 245  Q
    ||||| ||||||||||||||| | ||| ||||||||||  |||||| ||| || |||||| | |  ||  |||||||  ||||||||||||| |||||||    
T  17849283 caagcaattgcatttgattggaataagcgggtgaatgtcattaaagatgtagctaatgctctatgttatatgcatcatcattgctcacctccgattgttc 17849382  T
Q  246 atcgtgatatatcaag 261  Q
    |||| |||||||||||    
T  17849383 atcgagatatatcaag 17849398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 16103645 - 16103759
Alignment:
Q  147 aagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttca 246  Q
    |||| ||||| ||||||||| | ||||| ||||||||  |||||| ||| || |||||||| | |||| ||||||| |||||||| ||||| ||||||||    
T  16103645 aagcaattgcgtttgattggaacaagagagtgaatgtccttaaagatgtagctaatgctttatgctacatgcatcatgattgctcgcctccaattgttca 16103744  T
Q  247 tcgtgatatatcaag 261  Q
      | |||||||||||    
T  16103745 cagagatatatcaag 16103759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 17825454 - 17825340
Alignment:
Q  147 aagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttca 246  Q
    |||| ||||||||||| ||| | |||||||||||||   |||||| | | || |||||| | |  ||  |||||||  ||||||||||||| ||||||||    
T  17825454 aagcaattgcatttgactggaataagagggtgaatgccattaaagatatagctaatgctgtatgttatatgcatcatcattgctcacctccaattgttca 17825355  T
Q  247 tcgtgatatatcaag 261  Q
    ||| |||||||||||    
T  17825354 tcgagatatatcaag 17825340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 4924 - 4810
Alignment:
Q  147 aagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttca 246  Q
    |||| |||||||||| |||| ||||||||||||||||| |||||| | | || |||||||| | |||  |||| || |||||| | ||||| ||||||||    
T  4924 aagcaattgcatttggttggaaaaagagggtgaatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttca 4825  T
Q  247 tcgtgatatatcaag 261  Q
    ||| |||||||||||    
T  4824 tcgagatatatcaag 4810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 13757 - 13643
Alignment:
Q  147 aagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttca 246  Q
    |||| |||||||||| |||| ||||||||||||||||| |||||| | | || |||||||| | |||  |||| || |||||| | ||||| ||||||||    
T  13757 aagcaattgcatttggttggaaaaagagggtgaatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttca 13658  T
Q  247 tcgtgatatatcaag 261  Q
    ||| |||||||||||    
T  13657 tcgagatatatcaag 13643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 15002873 - 15002987
Alignment:
Q  157 atttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatata 256  Q
    |||||||||| | |||||||||||| |  |||||| ||| || |||||||| | |||  ||||||| ||||| || ||||||||||||||||| ||||||    
T  15002873 atttgattggaataagagggtgaatatcattaaagatgtagctaatgctttatgctatctgcatcatgattgttcccctcctattgttcatcgagatata 15002972  T
Q  257 tcaagtaaaaatgtt 271  Q
    || || || ||||||    
T  15002973 tccagcaagaatgtt 15002987  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 14532091 - 14531977
Alignment:
Q  157 atttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatata 256  Q
    |||||||||| | | ||||||||||||  |||||| | | || |||||||| | |||  | ||||| || ||||||||||||||||||||||| ||||||    
T  14532091 atttgattggaataggagggtgaatgtcattaaagatatagctaatgctttatgctatctacatcatgactgctcacctcctattgttcatcgagatata 14531992  T
Q  257 tcaagtaaaaatgtt 271  Q
    || || || ||||||    
T  14531991 tccagcaagaatgtt 14531977  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 15011766 - 15011880
Alignment:
Q  157 atttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatata 256  Q
    |||||||||| | |||||||||||| || |||||| | | || ||||| || | |||  ||||||| || ||||| ||||||||||||||||| ||||||    
T  15011766 atttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgagatata 15011865  T
Q  257 tcaagtaaaaatgtt 271  Q
    || || || ||||||    
T  15011866 tccagcaagaatgtt 15011880  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 14504777 - 14504855
Alignment:
Q  186 ttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatatatcaagtaa 264  Q
    |||||| ||| || |||||||| | |||| ||||||| ||| |||||||| | ||||||||||| |||||||| |||||    
T  14504777 ttaaagatgtagctaatgctttatactacatgcatcatgatcgctcacctgcaattgttcatcgcgatatatcgagtaa 14504855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 15017881 - 15017995
Alignment:
Q  157 atttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatata 256  Q
    |||||||||| | |||||||||||| || |||||| | | || ||||| || | |||  ||||||| ||||| || |||||||| |||||||| ||||||    
T  15017881 atttgattggaataagagggtgaatattattaaagatatagctaatgccttatgctatctgcatcatgattgttcccctcctatagttcatcgagatata 15017980  T
Q  257 tcaagtaaaaatgtt 271  Q
    || || || ||||||    
T  15017981 tccagcaagaatgtt 15017995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 14521909 - 14521856
Alignment:
Q  218 catcacgattgctcacctcctattgttcatcgtgatatatcaagtaaaaatgtt 271  Q
    ||||| || ||||||||||||||||||||||| |||||||| || || ||||||    
T  14521909 catcatgactgctcacctcctattgttcatcgagatatatccagcaagaatgtt 14521856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 15033218 - 15033319
Alignment:
Q  157 atttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatata 256  Q
    |||||||||| | | ||||||| ||||| |||||| | | || |||||||| | |||  ||||||| ||||| |||||| | ||||||||||| ||||||    
T  15033218 atttgattggaataggagggtggatgttattaaagatatagctaatgctttatgctatatgcatcatgattgttcaccttcaattgttcatcgcgatata 15033317  T
Q  257 tc 258  Q
    ||    
T  15033318 tc 15033319  T

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Target: scaffold0400 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 7283 - 7368
Alignment:
Q  186 ttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatatatcaagtaaaaatgtt 271  Q
    |||||||||| || |||||||| | |||  |||||||| ||||||||||| | |||||||||||||||||||| || || ||||||    
T  7283 ttaaaggtgtagctaatgctttatgctatatgcatcacaattgctcaccttcaattgttcatcgtgatatatccagcaagaatgtt 7368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 13554 - 13668
Alignment:
Q  157 atttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatata 256  Q
    |||||||||| | |||||||||||| |  |||||| | | || ||||| || | |||  ||||||| ||||| || ||||||||||||||||| ||||||    
T  13554 atttgattggaataagagggtgaatatcattaaagatatagctaatgccttattctatctgcatcatgattgttcccctcctattgttcatcgagatata 13653  T
Q  257 tcaagtaaaaatgtt 271  Q
    || || || ||||||    
T  13654 tccagcaagaatgtt 13668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 7927 - 8012
Alignment:
Q  186 ttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatatatcaagtaaaaatgtt 271  Q
    |||||||||| || |||||||| | |||  |||||||| ||||||||||| | |||||||||||||||||||| || || ||||||    
T  7927 ttaaaggtgtagctaatgctttatgctatatgcatcacaattgctcaccttcaattgttcatcgtgatatatccagcaagaatgtt 8012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 14197 - 14311
Alignment:
Q  157 atttgattgggaaaagagggtgaatgttgttaaaggtgttgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatata 256  Q
    |||||||||| | |||||||||||| |  |||||| | | || ||||| || | |||  ||||||| ||||| || ||||||||||||||||| ||||||    
T  14197 atttgattggaataagagggtgaatatcattaaagatatagctaatgccttattctatctgcatcatgattgttcccctcctattgttcatcgagatata 14296  T
Q  257 tcaagtaaaaatgtt 271  Q
    || || || ||||||    
T  14297 tccagcaagaatgtt 14311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 17028673 - 17028720
Alignment:
Q  224 gattgctcacctcctattgttcatcgtgatatatcaagtaaaaatgtt 271  Q
    |||||||||||| | |||||||||||||||||||| ||||| ||||||    
T  17028673 gattgctcaccttcaattgttcatcgtgatatatccagtaagaatgtt 17028720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 17559109 - 17559156
Alignment:
Q  224 gattgctcacctcctattgttcatcgtgatatatcaagtaaaaatgtt 271  Q
    |||||||||||| | |||||||||||||||||||| ||||| ||||||    
T  17559109 gattgctcaccttcaattgttcatcgtgatatatccagtaagaatgtt 17559156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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