View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17098_high_1 (Length: 558)
Name: NF17098_high_1
Description: NF17098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17098_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 8 - 543
Target Start/End: Original strand, 5592591 - 5593123
Alignment:
| Q |
8 |
aagcaaaggtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagattctgcatactgctcagggctataaacgttgct |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5592591 |
aagcaaaagtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagattttctgcatactgctcagggctataaacgttgct |
5592690 |
T |
|
| Q |
108 |
tgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaagcatttgttaaggtattcttgagctttgtca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5592691 |
tgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaagcatttgttaaggtattcttgagctttgtca |
5592790 |
T |
|
| Q |
208 |
attcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagcataaccctgtacgaacataatgttat |
307 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5592791 |
attcctccaagttggctagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagcataaccctgtacggacataatgttat |
5592890 |
T |
|
| Q |
308 |
ttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaatttaaaccttagccgagtatgtctccatacgaattccagc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5592891 |
ttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaatttaaaccttagccgagtatgtctccatacgaattccagc |
5592990 |
T |
|
| Q |
408 |
tccgccagatgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaaccaagtaactgagctgcaatc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5592991 |
tccgccagatgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaaccaagtaactgagctgcaat- |
5593089 |
T |
|
| Q |
508 |
aaaagaagttcatagtttaagctgaatcaagagttt |
543 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
5593090 |
--aagaagttcatagtttaagctgaatcaaaagttt |
5593123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 38 - 512
Target Start/End: Original strand, 5572884 - 5573358
Alignment:
| Q |
38 |
atacctgtaaattcaaagataactcttcaattagagattctgcatactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaatt |
137 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||| | | || |||||||||||||||||||| |
|
|
| T |
5572884 |
ataccagtaaattcaaagataactcttgaattagagcttctgcatactgctcagggctataaatgtgacttgttgggtagaattggggaagaaagtaatt |
5572983 |
T |
|
| Q |
138 |
atttatgtaatcattactgccaatatgcacataatacaagcatttgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaa |
237 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
5572984 |
gtttatgtaatcgttacttccaatattcacataatacaagcatttgttaaggtattgttgagctttgtcaatacctccaagtctgctagcaatttgagaa |
5573083 |
T |
|
| Q |
238 |
actataactctgtgatttcttaactgtaatcccaagctaatagcataaccctgtacgaacataatgttatttttgcggcatgtgtatgagtaatgtaaca |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5573084 |
actataactctgtgatttcttaactgtaatcccaagctaatagcataaccctgtacggacataatgttatttttgcggcatgtgtatgagtaatgtaaca |
5573183 |
T |
|
| Q |
338 |
aaaatactctaatcatctactaaaaactaatttaaaccttagccgagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttgag |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5573184 |
aaaatactctaatcatctactaaaaactaatttaaaccttagctgagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttgag |
5573283 |
T |
|
| Q |
438 |
tatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaaccaagtaactgagctgcaatcaaaag |
512 |
Q |
| |
|
||||||||||||| | ||||| ||||||||||||||||| |||||||| ||||| | ||||||||||||||||| |
|
|
| T |
5573284 |
tatgtctgaaccactgatgtttgcaaatggtggaatgaaattctcaaatccaagaagttgagctgcaatcaaaag |
5573358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 5586373 - 5586629
Alignment:
| Q |
16 |
gtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagattctgcatactgctcagggctataaacgttgcttgatagat |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| || |||| | ||| |
|
|
| T |
5586373 |
gtgaaacacaaagttcaaggggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtgtcttgttggat |
5586472 |
T |
|
| Q |
116 |
ataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaagcatttgttaaggtattcttgagctttgtcaattcctcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || | ||| |
|
|
| T |
5586473 |
ataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattcttgagctttgttaagacttcc |
5586572 |
T |
|
| Q |
216 |
aagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatcccaa |
272 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |||||||| |||||||||||||||| |
|
|
| T |
5586573 |
aagtctgctagcaatttgagaaattataactttgtgattttttaactgtaatcccaa |
5586629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 5575888 - 5576246
Alignment:
| Q |
11 |
caaaggtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagattctgcatactgctcagggctataaacgttgcttga |
110 |
Q |
| |
|
||||||| ||||||| |||| |||||||||| |||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||| | |||| |
|
|
| T |
5575888 |
caaaggtcaaacacagagtttgagtggataccaataaatttaaagataactcttgaattagagcttctgcatattgctcagggctataaatttgacttgt |
5575987 |
T |
|
| Q |
111 |
tagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaagcatttgttaaggtattcttgagctttgtcaatt |
210 |
Q |
| |
|
| | || ||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5575988 |
tgggtagaattgaggacgaaagtaattgtttatgtaatcattactgccaatattcacataatacaagcatttgctaaggtattcttgagctttgtcaata |
5576087 |
T |
|
| Q |
211 |
cctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagcataaccctgtacgaacataatgttatttt |
310 |
Q |
| |
|
||| ||||| ||||||||| |||||||||||||| |||||||| ||||||||||||||| || ||| || ||||||| || | ||||||||||||| |
|
|
| T |
5576088 |
ccttcaagtctgctagcaattcgagaaactataactttgtgattttctaactgtaatcccaaactgataacaaaaccctgcacagaaataatgttatttt |
5576187 |
T |
|
| Q |
311 |
tgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaatt |
369 |
Q |
| |
|
| ||||| |||||||| ||||| |||||||||| | | ||||||||||| |||||||| |
|
|
| T |
5576188 |
ggtggcatatgtatgagcaatgtgacaaaaatacacaagtcatctactaataactaatt |
5576246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 387 - 537
Target Start/End: Original strand, 5576313 - 5576463
Alignment:
| Q |
387 |
tgtctccatacgaattccagctccgccagatgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaa |
486 |
Q |
| |
|
|||||| ||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
5576313 |
tgtctcgatacgaattccagctgcaccagatgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctcaaaa |
5576412 |
T |
|
| Q |
487 |
ccaagtaactgagctgcaatcaaaagaagttcatagtttaagctgaatcaa |
537 |
Q |
| |
|
||||| | |||||||||||| ||||||| || | ||||| ||||||||||| |
|
|
| T |
5576413 |
ccaagaagctgagctgcaataaaaagaactttacagtttgagctgaatcaa |
5576463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 370 - 543
Target Start/End: Original strand, 5586717 - 5586890
Alignment:
| Q |
370 |
taaaccttagccgagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtg |
469 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
5586717 |
taaaccttagccatgcttgtctcggtacgaattccagctgcgccagatgcgtagttcacacctttgagtatgtctgagccattaatgtttgcaaatggtg |
5586816 |
T |
|
| Q |
470 |
gaatgaatttctcaaaaccaagtaactgagctgcaatcaaaagaagttcatagtttaagctgaatcaagagttt |
543 |
Q |
| |
|
||||||| |||||||| ||||| | ||||||| ||||||||| || || ||||||| ||||||||||| ||||| |
|
|
| T |
5586817 |
gaatgaagttctcaaagccaagaagctgagctacaatcaaaataactttatagtttgagctgaatcaaaagttt |
5586890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 169 - 369
Target Start/End: Original strand, 5582176 - 5582376
Alignment:
| Q |
169 |
taatacaagcatttgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatc |
268 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||| ||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
5582176 |
taatacaagcatttgttaaggtattgttcagaactgtcaatacctccaagtctgctagcaatttgagaaactattactttgtgattctttaactgtaatc |
5582275 |
T |
|
| Q |
269 |
ccaagctaatagcataaccctgtacgaacataatgttatttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaat |
368 |
Q |
| |
|
||||||| ||| || |||||||||| || |||||||||||| | | ||||| ||| || | ||||||||||||| |||| || |||||||||||||||| |
|
|
| T |
5582276 |
ccaagctgataacagaaccctgtacagacgtaatgttattttggtgacatgtatataagcagtgtaacaaaaatattctagtcctctactaaaaactaat |
5582375 |
T |
|
| Q |
369 |
t |
369 |
Q |
| |
|
| |
|
|
| T |
5582376 |
t |
5582376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 387 - 537
Target Start/End: Original strand, 5582483 - 5582633
Alignment:
| Q |
387 |
tgtctccatacgaattccagctccgccagatgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaa |
486 |
Q |
| |
|
|||||| | ||||||||||||||| | |||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
5582483 |
tgtctcgacacgaattccagctccacgagatgcatagttcacaccttagagtatgtctgaaccactaatgtttgcaaatggtagaatgaagttctcaaaa |
5582582 |
T |
|
| Q |
487 |
ccaagtaactgagctgcaat-caaaagaagttcatagtttaagctgaatcaa |
537 |
Q |
| |
|
|||| | |||||||||||| |||| || || ||||||| ||||||||||| |
|
|
| T |
5582583 |
-caagaagctgagctgcaataaaaaataactttatagtttgagctgaatcaa |
5582633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 509
Target Start/End: Complemental strand, 12059556 - 12059434
Alignment:
| Q |
387 |
tgtctccatacgaattccagctccgccagatgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaa |
486 |
Q |
| |
|
|||||| |||| |||||| ||||| | ||||||||||||||| || |||||||||||||||||||| |||| ||||||| |||||||||||||| ||| |
|
|
| T |
12059556 |
tgtctcgatacaaattcctgctccctctgatgcatagttcacatctctgagtatgtctgaaccattagtgtttgcaaatgatggaatgaatttctaaaat |
12059457 |
T |
|
| Q |
487 |
ccaagtaactgagctgcaatcaa |
509 |
Q |
| |
|
|||| | |||||||||||||| |
|
|
| T |
12059456 |
ccaacaaggtgagctgcaatcaa |
12059434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 389 - 491
Target Start/End: Complemental strand, 12064924 - 12064822
Alignment:
| Q |
389 |
tctccatacgaattccagctccgccagatgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaacc |
488 |
Q |
| |
|
|||| |||| |||||| ||||| | |||||||| |||||| ||||||||||||||||||||||| |||| ||||||| |||||||||||||| ||| || |
|
|
| T |
12064924 |
tctcgatacaaattcccgctccctcggatgcatatttcacatctttgagtatgtctgaaccattagtgtttgcaaatgatggaatgaatttctaaaatcc |
12064825 |
T |
|
| Q |
489 |
aag |
491 |
Q |
| |
|
||| |
|
|
| T |
12064824 |
aag |
12064822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 481
Target Start/End: Original strand, 5558827 - 5558911
Alignment:
| Q |
397 |
cgaattccagctccgccagatgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttct |
481 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||| ||||| ||||||||| || |||| ||||| ||||| |||||||||| |
|
|
| T |
5558827 |
cgaattccagctgcaccagatgcatagttaacacctttaagtatatctgaaccaatagtgtttgcaaagggtgggatgaatttct |
5558911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 491
Target Start/End: Complemental strand, 12052137 - 12052033
Alignment:
| Q |
387 |
tgtctccatacgaattccagctccgccagatgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaa |
486 |
Q |
| |
|
|||||| ||||||||||| ||||| || ||||||| |||||||||||||| || ||| |||||||| |||| ||||||| |||||||||| ||| ||| |
|
|
| T |
12052137 |
tgtctcgatacgaattcctgctccctcatatgcataattcacacctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatctaaaat |
12052038 |
T |
|
| Q |
487 |
ccaag |
491 |
Q |
| |
|
||||| |
|
|
| T |
12052037 |
ccaag |
12052033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 12052563 - 12052456
Alignment:
| Q |
166 |
acataatacaagcatttgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgta |
265 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||| ||| |||| | ||||||| | ||||||||| ||||||||||| || ||||||| | ||||||| |
|
|
| T |
12052563 |
acataacacaaacatttgttaaggtattgctgagttttttcaagacttccaagtctagtagcaatttcagaaactataagtcggtgatttgtcaactgta |
12052464 |
T |
|
| Q |
266 |
atcccaag |
273 |
Q |
| |
|
|| ||||| |
|
|
| T |
12052463 |
ataccaag |
12052456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 481
Target Start/End: Original strand, 5568505 - 5568572
Alignment:
| Q |
414 |
agatgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttct |
481 |
Q |
| |
|
|||||||||||| |||||||| |||||| |||| ||| || |||| ||||||||||| ||||| |||| |
|
|
| T |
5568505 |
agatgcatagttaacacctttaagtatgcctgagccaatattgtttgcaaatggtgggatgaaattct |
5568572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 490
Target Start/End: Complemental strand, 12076090 - 12076017
Alignment:
| Q |
417 |
tgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaaccaa |
490 |
Q |
| |
|
||||||||||| |||||| | ||||||| |||||||| ||| ||||||| || ||| ||||||||||| |||| |
|
|
| T |
12076090 |
tgcatagttcagacctttaaatatgtctaaaccattagggtttgcaaatgatgaaattaatttctcaaatccaa |
12076017 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 5613506 - 5613546
Alignment:
| Q |
139 |
tttatgtaatcattactgccaatatgcacataatacaagca |
179 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
5613506 |
tttatgtaatcgttgctgccaatattcacataatacaagca |
5613546 |
T |
|
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