View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17098_high_2 (Length: 427)
Name: NF17098_high_2
Description: NF17098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17098_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 26235213 - 26235624
Alignment:
| Q |
1 |
tagtgcttttgggtgctatatatttttcgcaacgatttcttgtgtagctattggaaaattgttaatggtgtatttggaatggagtgctatttggaatatg |
100 |
Q |
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| T |
26235213 |
tagtgcttttgggtgctatatatttttcgcaacgatttcttgtgtagctattggaaaattgttaatggtgtatttggaatggagtgctatttggaatatg |
26235312 |
T |
|
| Q |
101 |
agtattgcgacat--gtgttggatggtatatatggcattagggctttaagagtgtcatatttctacagcagtggtaatcagaagagaggacttgttttga |
198 |
Q |
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| T |
26235313 |
agtattgcgacatcagtgttggatggtatatatggcattagggctttaagagtgtcatatttctacagcagtggtaatcagaagagaggacttgttttga |
26235412 |
T |
|
| Q |
199 |
tgcttgttttctttgtttatggagnnnnnnnaaggttaatatgtatctactttggatgctacaaaggaggcagtggaatttttctattaattgggatagt |
298 |
Q |
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| T |
26235413 |
tgcttgttttctttgtttatggagtttttttaaggttaatatgtatctactttggatgctacaaaggaggcagtggaatttttctattaattgggatagt |
26235512 |
T |
|
| Q |
299 |
tgggattcttactgtggtgaatatactaaaatgggtgtcttgtgttatttatttcaatgattgcaaggagaggaaaatggagatgaaagttgatgatgag |
398 |
Q |
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| T |
26235513 |
tgggattcttactgtggtgaatatactaaaatgggtgtcttgtgttatttatttcaatgattgcaaggagaggaaaatggagatgaaagttgatgatgag |
26235612 |
T |
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| Q |
399 |
gaaataggcaaa |
410 |
Q |
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| T |
26235613 |
gaaataggcaaa |
26235624 |
T |
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Back To:
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Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 45 - 295
Target Start/End: Original strand, 37672923 - 37673175
Alignment:
| Q |
45 |
tagctattggaaaattgttaatggtgtatttggaatggagtgctatttggaatatgagtattgcgacat--gtgttggatggtatatatggcattagggc |
142 |
Q |
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| T |
37672923 |
tagctgttggaaaattgttgatgatatatttggaatgtagtgctatatggaatatgagtattgtggtatcagtgttggagggtatttatggtactggagc |
37673022 |
T |
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| Q |
143 |
tttaagagtgtcatatttctacagcagtggtaatcagaagagaggacttgttttgatgcttgttttctttgtttatggagnnnnnnnaaggttaatatgt |
242 |
Q |
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|||| || || |||| | ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| | |||||||| ||| |
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| T |
37673023 |
gttaaaaggatcttattatttcagcagtggtaatcataagagaggacttgttatgatgcttgttttctttgtttttggtggtgttttgaggttaatgtgt |
37673122 |
T |
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| Q |
243 |
atctactttggatgctacaaaggaggcagtggaatttttctattaattgggat |
295 |
Q |
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|||||||||| |||||| |||||||| |||||||||||| || ||||||||| |
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| T |
37673123 |
atctactttgaatgctataaaggagggagtggaatttttatacaaattgggat |
37673175 |
T |
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