View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17098_low_5 (Length: 250)
Name: NF17098_low_5
Description: NF17098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17098_low_5 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 5592346 - 5592583
Alignment:
| Q |
9 |
agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtc |
108 |
Q |
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| T |
5592346 |
agcagagaacttattattgaaatgatccactaaagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtc |
5592445 |
T |
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| Q |
109 |
tcatgagtaaggatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttacgtacata |
208 |
Q |
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| T |
5592446 |
tcatgagtaaggatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgt----tacata |
5592541 |
T |
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| Q |
209 |
taccaaatgcttctgttataaaccatgatattcataaatcat |
250 |
Q |
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| T |
5592542 |
taccaaatgcttctgttataaaccatgatattcataaatcat |
5592583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 5586077 - 5586309
Alignment:
| Q |
9 |
agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
5586077 |
agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtc |
5586176 |
T |
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| Q |
109 |
tcatgagtaaggatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttacgtacata |
208 |
Q |
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| T |
5586177 |
ccatgagtaaagatggcacttggagtgcagcccaatagacctaacccagataacacatattttcttgctccaatttcatgtaaagcctgttcc----atg |
5586272 |
T |
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| Q |
209 |
taccaaatgcttctgttataaaccatgatattcataa |
245 |
Q |
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| T |
5586273 |
taccaaatgcctctattataaaccatgatattcataa |
5586309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 5575607 - 5575795
Alignment:
| Q |
13 |
gagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtctcat |
112 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||| | |||||| ||| ||||| || ||||| | ||| ||| |
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| T |
5575607 |
gagaacttattattgaaatgatccactaaaaatttaagcttgaaattgaaaatcaatgcaggggcattttcctcatcaacgcaggacccgtttgttccat |
5575706 |
T |
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| Q |
113 |
gagtaaggatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttac |
201 |
Q |
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| T |
5575707 |
gagtaaagatggcacttggtgtgcagcccaaaaggcctaaccctactaacacatattttctagctccaatgtcatgtaaagtctgttac |
5575795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 5572667 - 5572712
Alignment:
| Q |
9 |
agcagagaacttattattgaaatgatccactagagatttaagcttg |
54 |
Q |
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| T |
5572667 |
agcagagaacttattattgaaatgttccactagagatttaagcttg |
5572712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 5580486 - 5580531
Alignment:
| Q |
9 |
agcagagaacttattattgaaatgatccactagagatttaagcttg |
54 |
Q |
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| T |
5580486 |
agcagagaacttattattgaaatgttccactagagatttaagcttg |
5580531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 5580576 - 5580614
Alignment:
| Q |
159 |
taacacatattttcttgctccaatttcatgtaaagcctg |
197 |
Q |
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| T |
5580576 |
taacacatattttcttgctccaatgtcatgtagagcctg |
5580614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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