View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17098_low_6 (Length: 242)
Name: NF17098_low_6
Description: NF17098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17098_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 819075 - 818889
Alignment:
| Q |
18 |
ggaatccaagtgcttcctttattctaaggtgtatactagaactatatttatattccatatatgctgaccatgcattacttttcttttcggcttgtagtgc |
117 |
Q |
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| T |
819075 |
ggaatccaagtgcttcctttattctaaggtgtatactagaactatatttatattccatatatgctgaccatgcattaattttcttttcagcttgtagtgc |
818976 |
T |
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| Q |
118 |
ctacgaacgagtaatagatttagagagtatctattttgtggctgaggatcaaacatcaatctaagacttgttaagtgctcctatcca |
204 |
Q |
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| T |
818975 |
ctacgaacgagtaatagatttagagagtatctattttgtggctgaggatcaaacatcaatctaagacttgttaagtgctcctatcca |
818889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 830539 - 830350
Alignment:
| Q |
18 |
ggaatccaagtgcttcctttattctaaggtgtatactagaactatatttatat--tccatatatgctgaccatgcattacttttcttttcggcttgtagt |
115 |
Q |
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| T |
830539 |
ggaatccaagtgctccctttattctgaggtgtatactagtattgtatttatatattccatatatgctgaccatgcattaattttcttttcagcttgtagt |
830440 |
T |
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| Q |
116 |
g--cctacgaacgagtaatagatttagagagtatctattttgtggctgaggatcaaacatcaatctaagacttgttaagtgctcctatcca |
204 |
Q |
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| T |
830439 |
gtgcctacgaatgagtaaaagatttaaaaagtatcttttttgtggctaaggatcaaacatcaatct-agacttgttaagtgctcctatcca |
830350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 1195719 - 1195530
Alignment:
| Q |
18 |
ggaatccaagtgcttcctttattctaaggtgtatactagaactatatttatat--tccatatatgctgaccatgcattacttttcttttcggcttgtagt |
115 |
Q |
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| T |
1195719 |
ggaatccaagtgctccctttattctgaggtgtatactagtattgtatttatatattccatatatgctgaccatgcattaattttcttttcagcttgtagt |
1195620 |
T |
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| Q |
116 |
g--cctacgaacgagtaatagatttagagagtatctattttgtggctgaggatcaaacatcaatctaagacttgttaagtgctcctatcca |
204 |
Q |
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| T |
1195619 |
gtgcctacgaatgagtaaaagatttaaaaagtatcttttttgtggctaaggatcaaacatcaatct-agacttgttaagtgctcctatcca |
1195530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 777875 - 777732
Alignment:
| Q |
59 |
ctatatttatattccatatatgctgaccatgcattacttttcttttcggcttgtagtgcctacgaacgagtaatagatttagagagtatctattttgtgg |
158 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
777875 |
ctatatttatattccatatatgctgaccatgcattaattttcttttctggttgtagagcctacgaacgagtaatagatttagaaagtatctattttgtgg |
777776 |
T |
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| Q |
159 |
ctgaggatcaaacatcaatctaagacttgttaagtgctcctatcca |
204 |
Q |
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| T |
777775 |
ctaaggatcaaacatcaatctaa-acttgtt-agtgctcctatcca |
777732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 59 - 181
Target Start/End: Complemental strand, 788556 - 788434
Alignment:
| Q |
59 |
ctatatttatattccatatatgctgaccatgcattacttttcttttcggcttgtagtgcctacgaacgagtaatagatttagagagtatctattttgtgg |
158 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
788556 |
ctatatttatattccatatatgctgaccatgcattaattttcttttctggttgtagagcctacgaacgagtaatagatttagaaagtatctattttgtgg |
788457 |
T |
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| Q |
159 |
ctgaggatcaaacatcaatctaa |
181 |
Q |
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| T |
788456 |
ctaaggatcaaacatcaatctaa |
788434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 8457658 - 8457764
Alignment:
| Q |
65 |
ttatattccatatatgctgaccatgcattacttttcttttcggcttgtagtgcctacgaacgagtaatagatttagagagtatctattttgtggctgagg |
164 |
Q |
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||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| |
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| T |
8457658 |
ttatatttcatatatgctgaccatgcaataaatttcttttcatgttgtagtgcctacgaacgagtaataaatttagaaagtatctattttgtggcttagg |
8457757 |
T |
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| Q |
165 |
atcaaac |
171 |
Q |
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| T |
8457758 |
atcaaac |
8457764 |
T |
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