View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17099_high_14 (Length: 239)
Name: NF17099_high_14
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_high_14 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42204847 - 42205069
Alignment:
| Q |
1 |
tattagtatattttatatatgtattgtatcctataattttaaatgaatgatgaatcgccgtatcggatgtgtattgtatctgatactcgtttcttgtctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204847 |
tattagtatattttatatatgtattgtatcctataattttaaatgaatgatgaatcgccgtatcggatgtgtattgtatctgatactcgtttcttgtctg |
42204946 |
T |
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| Q |
101 |
tgattcataggtagtattgttatttttaatctataattcctttttgccgtacattgttttgtgttcattcaaatatgatattccctttttgtttaactta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42204947 |
tgattcataggtagtattgttatttttaatctataattcctttttgccgtacattgttttgtgtacattcaaatatgatattccctttttgtttaactta |
42205046 |
T |
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| Q |
201 |
taattctggtaagcttctaaatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
42205047 |
taattctggtaagcttctaaatt |
42205069 |
T |
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Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 406330 - 406241
Alignment:
| Q |
19 |
atgtattgtatcctataattttaaatgaatgatgaatcgccgtatcggatgtgtattgtatctgatactcgtttcttgtctgtgattcat |
108 |
Q |
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|||||||||||||||| ||| ||||||||| | ||||||||||||||||||| | ||||| ||||||||| || |||| ||| ||||| |
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| T |
406330 |
atgtattgtatcctatgttttccaatgaatgacgtatcgccgtatcggatgtgtgtcgtatccgatactcgtatcgtgtccgtgcttcat |
406241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 7124914 - 7124958
Alignment:
| Q |
21 |
gtattgtatcctataattttaaatgaatgatgaatcgccgtatcg |
65 |
Q |
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|||||||||||||||||||| ||||| ||| | |||||||||||| |
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| T |
7124914 |
gtattgtatcctataattttcaatgactgacgtatcgccgtatcg |
7124958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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