View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17099_high_2 (Length: 671)
Name: NF17099_high_2
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 553; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 21 - 660
Target Start/End: Complemental strand, 14085707 - 14085065
Alignment:
| Q |
21 |
tttgatgcatactttgttgagtttatccatattttgttgattcttatgcttcttcctttgagttcattgtgtctttgtgtctttcttattctaatggtct |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085707 |
tttgatgcatactttgttgagtttatccatattttgttgattcttatgcttcttcctttgagttcattgtgtctttgtgtctttcttattctaatggtct |
14085608 |
T |
|
| Q |
121 |
gttatttattttgnnnnnnnagacacatggaaagtggtactgccagtgtgaatcctttgcctcaaattccaattctagttgctagaactcaaggagtctc |
220 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085607 |
gttatttattttgtttttttagacacatggaaagtggtactgccagtgtgaatcctttgcctcaaattccaattctagttgctagaactcaaggagtctc |
14085508 |
T |
|
| Q |
221 |
gaggctgctgagttactgcgaggccaaggacatgaacatgctgagttagtgctaaaactaaagaaaagaaaacatgatagacatccttcaatggcttgga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085507 |
gaggctgctgagttactgcgaggccaaggacatgaacatgttgagttagtgctaaaactaaagaaaagaaaacatgatagacatccttcaatggcttgga |
14085408 |
T |
|
| Q |
321 |
gacattttacgaagaaaagagacgcatacgccacattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcgaactaacaacatgct |
420 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14085407 |
gacattttacgaagaaaagagacgcatacgccgaattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcaaactaacaacatgct |
14085308 |
T |
|
| Q |
421 |
taaacatatgaatgtttgtccaaaaacatgaaggtaattcttttactcttttaggttaatattggtttagca---ttgttttaactttgtatttgattta |
517 |
Q |
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| T |
14085307 |
taaacatatgaatgtttgtccaaaaacatgaaggtgattcttttactcttttagggtaatattggtttagcatttttgttttaactttgtatttgattta |
14085208 |
T |
|
| Q |
518 |
gtctatgtttactctgttttgatagttgtctttgattttagtttgctatactgtcatattttatggctttgatttgttagttactaatgtatattttctt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085207 |
gtctatgtttactctgttttgatagttgtctttgattttagtttgctatactgtcatattttatggctttgatttgttagttactaatgtatattttctt |
14085108 |
T |
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| Q |
618 |
tannnnnnnnnaacaggttaacaaatattctttctgtgctgct |
660 |
Q |
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|| ||||||||||||||||||||||||||| |||| |
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| T |
14085107 |
tatttttttttaacaggttaacaaatattctttctgtgatgct |
14085065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 39289642 - 39289585
Alignment:
| Q |
102 |
tttcttattctaatggtctgttatttattttgnnnnnnnagacacatggaaagtggta |
159 |
Q |
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| T |
39289642 |
tttcttattctaatggtgtgttatttatgttgcttgtatagacacatggaaagtggta |
39289585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 39383694 - 39383751
Alignment:
| Q |
102 |
tttcttattctaatggtctgttatttattttgnnnnnnnagacacatggaaagtggta |
159 |
Q |
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||||||||||||||||| |||||||||| ||| ||||||||||||||||||| |
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| T |
39383694 |
tttcttattctaatggtgtgttatttatgttgcttgtatagacacatggaaagtggta |
39383751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 3e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 241 - 614
Target Start/End: Original strand, 12189888 - 12190254
Alignment:
| Q |
241 |
aggccaaggacatgaacatgctgagttagtgctaaaactaaagaaaagaaaacatgatagacatccttcaatggcttggagacattttacgaagaaaaga |
340 |
Q |
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||||||||||| |||||||||| || ||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||| |||||||| | |
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| T |
12189888 |
aggccaaggacctgaacatgctaaggtagtgctaaaactaaagaaaagaaaacctgctagacctccttcaatggtttggagacattttatgaagaaaaaa |
12189987 |
T |
|
| Q |
341 |
gacgcatacgccacattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcgaactaacaacatgcttaaacatatgaatgtttgtc |
440 |
Q |
| |
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||| | ||| |||||||||| || || ||||||||| |||||| ||| | ||||||||||||||||||||||||||| |||| |||||| |
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| T |
12189988 |
gacac---tgcc---ttttgtaactattgcttcacttcttttgtttcaaatgcttccaaccatcgaactaacaacatgcttaaacacatgatgatttgtc |
12190081 |
T |
|
| Q |
441 |
caaaaacatgaaggtaattcttttactcttttaggttaatattggtttagca---ttgttttaactttgtatttgatttagtctatgtttactctgtttt |
537 |
Q |
| |
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|||||||||||||||| || ||||| | | | ||| || ||| ||||| | || || ||||||||||||||||||||||||| || ||||| |||| |
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| T |
12190082 |
caaaaacatgaaggtagtttttttattactctgagtt-atgttgatttagtaattttattgtaactttgtatttgatttagtctattttaactctatttt |
12190180 |
T |
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| Q |
538 |
gatagttgtctttgattttagtttgctatactgtcatattttatggctttgatttgttagttactaatgtatatttt |
614 |
Q |
| |
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| ||| |||||||||| ||||||||| || ||| ||||||| |||||||||||| |||| |||||||||||||||| |
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| T |
12190181 |
ggtagatgtctttgatgttagtttgc--tagtgttatattttgtggctttgatttattag-tactaatgtatatttt |
12190254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 12189684 - 12189772
Alignment:
| Q |
41 |
gtttatccatattttgttgattcttatgcttcttcctttgagttcattgtgtctttgtgtctttcttattctaatggtctgttatttat |
129 |
Q |
| |
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|||||| |||| ||||||||||||||| |||||||||| ||||||||| | ||||||| |||||||||| |||||||| |||| ||||| |
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| T |
12189684 |
gtttatgcatactttgttgattcttatacttcttccttggagttcattttttctttgtttctttcttatcctaatggtttgttgtttat |
12189772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 12189826 - 12189884
Alignment:
| Q |
141 |
agacacatggaaagtggtactgccagtgtgaatcctttgcctcaaattccaattctagt |
199 |
Q |
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||||||||| ||| || |||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
12189826 |
agacacatgaaaactgatactgctagtgtgaatcctttggctcaaattccaattctagt |
12189884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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