View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17099_high_20 (Length: 208)
Name: NF17099_high_20
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 2623725 - 2623560
Alignment:
| Q |
23 |
agtgcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaatta |
122 |
Q |
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| T |
2623725 |
agtgcaatgtgtttccttaatgaccttagattataagtttttatgtctctgccatcaattgtcactatcccttcaagtggatcatagaacctctcaatta |
2623626 |
T |
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| Q |
123 |
gtcctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaa |
188 |
Q |
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| T |
2623625 |
gtcctatgatcgttgatttcccagaaccacttttccctaccagagctgtcgattttccagcatcaa |
2623560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 2592181 - 2592012
Alignment:
| Q |
23 |
agtgcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaatta |
122 |
Q |
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| T |
2592181 |
agtgcaatgtgtttccttagtgaccttagattataaatttttatgtccctaccatcaattgtcactatccctttaagtggatcatagaacctctcaatta |
2592082 |
T |
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| Q |
123 |
gtcctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaatttt |
192 |
Q |
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| T |
2592081 |
gtcctatgatcgttgatttcccagaaccactttctcctaccaacgctgttgattttccggcatcaatttt |
2592012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 2569089 - 2569258
Alignment:
| Q |
23 |
agtgcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaatta |
122 |
Q |
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| T |
2569089 |
agtgcaatgtgttcccttaatgaccttagattatatgtctttatgtctctaccatcaattgtcactatccctttaagtggatcatagaatctttcaataa |
2569188 |
T |
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| Q |
123 |
gtcctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaatttt |
192 |
Q |
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|||||||||| |||||||| ||||||||||||||||| | |||| ||||||||||||||||||||||||| |
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| T |
2569189 |
gtcctatgattgttgattttccagaaccactttcccctaccaaagctgtcgattttccagcatcaatttt |
2569258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 2672467 - 2672633
Alignment:
| Q |
26 |
gcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtc |
125 |
Q |
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| T |
2672467 |
gcaatgtgtttcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtc |
2672566 |
T |
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| Q |
126 |
ctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaatttt |
192 |
Q |
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||||||| || ||||| ||||||||||||||||| | |||| | || |||||||| ||||||||||| |
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| T |
2672567 |
ctatgattgtcgattttccagaaccactttcccctaccaaagccgttgattttcctgcatcaatttt |
2672633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 2596648 - 2596817
Alignment:
| Q |
23 |
agtgcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaatta |
122 |
Q |
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|||||||| |||||||||||||| | || |||||| || |||||||| || |||||||||||||||||||||| || | ||||||||| |||||||||| |
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| T |
2596648 |
agtgcaatatgtttccttaatgatcgtagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctctcaatta |
2596747 |
T |
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| Q |
123 |
gtcctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaatttt |
192 |
Q |
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||||||| || || ||||| ||||||||||||||||| | |||| | ||||||||||| ||||||||||| |
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| T |
2596748 |
gtcctataattgtcgattttccagaaccactttcccctaccaaagccgtcgattttcctgcatcaatttt |
2596817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 2440235 - 2440067
Alignment:
| Q |
23 |
agtgcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaatta |
122 |
Q |
| |
|
|||||||| |||||||||||||| | || |||||||||||||||||| || || |||| |||||||||||||| ||| | ||||||||| |||||||||| |
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| T |
2440235 |
agtgcaatatgtttccttaatgatcgtagattataagtttttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaatta |
2440136 |
T |
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| Q |
123 |
gtcctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattt |
191 |
Q |
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|||||||||| || ||||| ||||||||||||||||| | |||| | || |||||||| || ||||||| |
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| T |
2440135 |
gtcctatgattgtcgattttccagaaccactttccccaaccaaagccgttgattttccggcgtcaattt |
2440067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 2641304 - 2641473
Alignment:
| Q |
23 |
agtgcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaatta |
122 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| ||||| || || ||||||||||||||||||| || | ||||||||| |||||||||| |
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| T |
2641304 |
agtgcaatgtgtttccttaacgaccttagattataagactttatatcttcaccatcaattgtcactatccctttaattggatcatagaatctctcaatta |
2641403 |
T |
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| Q |
123 |
gtcctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaatttt |
192 |
Q |
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|||||||||| ||||||||||| |||||||||||||| | |||| | |||||||||||||| || ||||| |
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| T |
2641404 |
gtcctatgattgttgatttccctgaaccactttccccgaccaaagccgtcgattttccagcgtcgatttt |
2641473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 2450948 - 2450824
Alignment:
| Q |
35 |
ttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcctatgatcg |
134 |
Q |
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|||||||||||||||| |||||||| ||||| || || || ||||| ||||||||||||| | | |||||| || |||||||||||||||||||| | |
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| T |
2450948 |
ttccttaatgaccttagattataagactttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatgattg |
2450849 |
T |
|
| Q |
135 |
ttgatttcccagaaccactttcccc |
159 |
Q |
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| T |
2450848 |
tcgattttccagaaccactttcccc |
2450824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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