View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17099_high_6 (Length: 398)
Name: NF17099_high_6
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_high_6 |
 | |
|
| [»] scaffold0214 (1 HSPs) |
| | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 23159280 - 23158928
Alignment:
| Q |
1 |
attttattcttgctatatgggttgaagcatcagtataattctcctctcttaacatttttt-ccttactcatatcctgaaacaaataagtaatgcactacg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23159280 |
attttattcttgctatatgggttgaagcattagtataattatcctctctttacatttttttccttactcatatcctgaaacaaataagtaatgcaccacg |
23159181 |
T |
|
| Q |
100 |
ttactacaaaatctaacttaacatagcattgataatcaattaatggctttccatttctactactataatcaattcactttacaaactacatcatttcaat |
199 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23159180 |
ttactacaaaatctaacttaacgtagcattgataatcaattaatggcttcccatttctactactataatcaattcactttacaaactacatcatttcaat |
23159081 |
T |
|
| Q |
200 |
tcatcaaattgtttnnnnnnnnnggatcaaaattatgagagttgtttatgatttaaattgacatcacaatctggttgccaacaaagaattaattaatgtg |
299 |
Q |
| |
|
| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
23159080 |
taatcaaattgtttaaaaaaaaaggatcaaaa-tatgagagttgtttatgatttaaattgacatcacaatctggttgccaacaaag----aattaatatg |
23158986 |
T |
|
| Q |
300 |
gagatctagtgcaagagatgtagagagaaagggtttaccctctatctttttcagttac |
357 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23158985 |
gagatctagtggaagagatgtagagagaaggggtttaccctctatctttttcagttac |
23158928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 67 - 357
Target Start/End: Complemental strand, 18764170 - 18763881
Alignment:
| Q |
67 |
tcatatcctgaaacaaataagtaatgcactacgttactacaaaatctaacttaacatagcattgataatcaattaatggctttccatttctactactata |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
18764170 |
tcatatcctgaaacaaataagtaatgcactacgtaactacaaaatctaacttaacgtagcattgataattaattaatggcttcccatttctactactata |
18764071 |
T |
|
| Q |
167 |
atcaattcactttacaaactacatcatttcaattcatcaaattgttt-nnnnnnnnnggatcaaaattatgagagttgtttatgatttaaattgacatca |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18764070 |
atcaattcactttacaaactacatcatttcaattcatcaaattgtttaaaaaaaaaaggatcaaaattatgagagttgtttatgatttaaattgacatca |
18763971 |
T |
|
| Q |
266 |
caatctggttgccaacaaagaattaattaatgtggagatctagtgcaagagatgtagagagaaagggtttaccctctatctttttcagttac |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
18763970 |
caatctggttgccaacaaagaattaattaatgtggagatctagtggaagagatgtagagagaa--gggttaacctctatctttttcagttac |
18763881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 20015356 - 20015296
Alignment:
| Q |
1 |
attttattcttgctatatgggttgaagcatcagtataattctcctctcttaacattttttc |
61 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20015356 |
attttcttctttctatatgggttgaagcatcagtataattctcctctctttacattttttc |
20015296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 20881164 - 20881096
Alignment:
| Q |
225 |
atcaaaattatgagagttgtttatgatttaaattgacatcacaatctggttgccaacaaagaattaatt |
293 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||| | |||| |||||||||| ||||| |
|
|
| T |
20881164 |
atcaaaattatgagacttgttcgggatttaaattgacattacaatattgttgtcaacaaagaaataatt |
20881096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 21684063 - 21684131
Alignment:
| Q |
225 |
atcaaaattatgagagttgtttatgatttaaattgacatcacaatctggttgccaacaaagaattaatt |
293 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||| | |||| |||||||||| ||||| |
|
|
| T |
21684063 |
atcaaaattatgagacttgttcgggatttaaattgacattacaatattgttgtcaacaaagaaataatt |
21684131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 20881256 - 20881159
Alignment:
| Q |
113 |
taacttaacatagcattgataatcaattaatggctttccatttctactactataatcaattcactttacaaac-----tacatcatttcaattcatcaaa |
207 |
Q |
| |
|
|||||||||| | || ||||||||||||| | ||| ||||||||| || ||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
20881256 |
taacttaacacatcaatgataatcaattattagctgcccatttctat--ctgtaatcaattcactttacaaactggagtacatcatttcaatgcatcaaa |
20881159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 21683971 - 21684068
Alignment:
| Q |
113 |
taacttaacatagcattgataatcaattaatggctttccatttctactactataatcaattcactttacaaac-----tacatcatttcaattcatcaaa |
207 |
Q |
| |
|
|||||||||| | || ||||||||||||| | ||| ||||||||| || ||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
21683971 |
taacttaacacatcaatgataatcaattattagctgcccatttctat--ctgtaatcaattcactttacaaactggagtacatcatttcaatgcatcaaa |
21684068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 23141 - 23209
Alignment:
| Q |
225 |
atcaaaattatgagagttgtttatgatttaaattgacatcacaatctggttgccaacaaagaattaatt |
293 |
Q |
| |
|
||||| ||||||||| ||||| | ||||||||||||||||||||| | |||| |||||||||||||||| |
|
|
| T |
23141 |
atcaatattatgagacttgttcaggatttaaattgacatcacaatattgttgtcaacaaagaattaatt |
23209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 31005 - 30937
Alignment:
| Q |
225 |
atcaaaattatgagagttgtttatgatttaaattgacatcacaatctggttgccaacaaagaattaatt |
293 |
Q |
| |
|
||||| ||||||||| ||||| | ||||||||||||||||||||| | |||| |||||||||||||||| |
|
|
| T |
31005 |
atcaatattatgagacttgttcaggatttaaattgacatcacaatattgttgtcaacaaagaattaatt |
30937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 31096 - 31001
Alignment:
| Q |
113 |
taacttaacatagcattgataatcaattaatggctttccatttctactactataatcaattcactttacaaac-----tacatcatttcaattcatcaa |
206 |
Q |
| |
|
|||||||||| | || |||||||||||| ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
31096 |
taacttaacacatcaaagataatcaattattggctgcccatttctacta---taatcaattcactttacaaactcgagtacatcatttcaatgcatcaa |
31001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 22933473 - 22933535
Alignment:
| Q |
231 |
attatgagagttgtttatgatttaaattgacatcacaatctggttgccaacaaagaattaatt |
293 |
Q |
| |
|
||||||||| ||||| | ||||||||||||||||||||| | |||| |||||||||||||||| |
|
|
| T |
22933473 |
attatgagacttgttcaggatttaaattgacatcacaatattgttgtcaacaaagaattaatt |
22933535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 43973445 - 43973365
Alignment:
| Q |
129 |
tgataatcaattaatggctttccatttctactactataatcaattcactttacaaac-----tacatcatttcaattcatcaaa |
207 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
43973445 |
tgataatcaattattggctgcccatttctacta---taatcaattcactttaaaaactggagtacatcatttcaatgcatcaaa |
43973365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 43973354 - 43973310
Alignment:
| Q |
249 |
gatttaaattgacatcacaatctggttgccaacaaagaattaatt |
293 |
Q |
| |
|
|||||||||||| |||||||| | ||||||| ||||||||||||| |
|
|
| T |
43973354 |
gatttaaattgatatcacaatattgttgccagcaaagaattaatt |
43973310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 25418623 - 25418691
Alignment:
| Q |
225 |
atcaaaattatgagagttgtttatgatttaaattgacatcacaatctggttgccaacaaagaattaatt |
293 |
Q |
| |
|
||||| ||||||||| ||||| | ||||||||||||||||||| | | |||| |||||||||||||||| |
|
|
| T |
25418623 |
atcaatattatgagacttgttcaggatttaaattgacatcacattattgttgtcaacaaagaattaatt |
25418691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 25418532 - 25418627
Alignment:
| Q |
113 |
taacttaacatagcattgataatcaattaatggctttccatttctactactataatcaattcactttacaaac-----tacatcatttcaattcatcaa |
206 |
Q |
| |
|
|||||||||| | || |||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
25418532 |
taacttaacacatcaaagataatcaattattggctgcccatttctac---tataatcaattcactttacaaactcgagtacatcatttcaatgcatcaa |
25418627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 7568223 - 7568288
Alignment:
| Q |
228 |
aaaattatgagagttgtttatgatttaaattgacatcacaatctggttgccaacaaagaattaatt |
293 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| | |||| ||||||| |||||||| |
|
|
| T |
7568223 |
aaaattatgagacttgttcgggatttaaattgacatcacaatatcgttgtcaacaaataattaatt |
7568288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 22544983 - 22544915
Alignment:
| Q |
225 |
atcaaaattatgagagttgtttatgatttaaattgacatcacaatctggttgccaacaaagaattaatt |
293 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||| ||||| | |||| |||||||||| ||||| |
|
|
| T |
22544983 |
atcaaaattatgagacttgttcgggaattaaattgacattacaatattgttgtcaacaaagaaataatt |
22544915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University