View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17099_high_7 (Length: 388)
Name: NF17099_high_7
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 32550713 - 32551096
Alignment:
| Q |
18 |
cctcaagctcaccctgaatcatggtgaggggtcctcacaccagcctgagatgacccatgaaatgcgcgagctgattcaaaaattgacacaagagcagctc |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32550713 |
cctcaagctcaccctgaatcatggtgagggatcctcacaccagcctgagatgacccatgaaatgcgcgagctgattcaaaaattgacacaagagcagctc |
32550812 |
T |
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| Q |
118 |
atacaacaaatggcgagtcaggaggctcttgtgcaaaaattgcttgaacgaaaa-------------------tatgaggagcaattggcccaatttaag |
198 |
Q |
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| T |
32550813 |
atacaacaaatggcgagtcaggaggcccttatgcaaaaattgcttgaacgaaaacggtcatatatatatataatatgaggagcaattggcccaatttaag |
32550912 |
T |
|
| Q |
199 |
caagcacatgctgggaggtcaggtgagcatgtgcaagttgaagagcctgcccact--gcacacaggagcgccgactctgaacgacaatgatgacccttat |
296 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32550913 |
caagcacatgctggaaggtcaggtgagcatgtgcaagttgaagagcctgcccacacagcacacaggagcgccgactctaaacgacaatgatgacccttat |
32551012 |
T |
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| Q |
297 |
cctatttatgatgaagaggaggtggagagcgacgatgaggattgaagatggacccctgttgatgtgtctttatatattttcttg |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
32551013 |
cctatttatgatgaagaggaggtggagagcgacgatgaggattgaagatggacccctgttgatgtgtttctatatattttcttg |
32551096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 40542890 - 40542707
Alignment:
| Q |
28 |
accctgaatcatggtgaggggtcctcacaccagcctgagatgacccatgaaatgcgcgagctgattcaaaaattgacacaagagcagctcatacaacaaa |
127 |
Q |
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| T |
40542890 |
acccttaatcatggtgaaggatccttccaacagcctgcactgacctctgaaatgtgtgaccttattcaaagattgactcaagagcagctcacacaacaaa |
40542791 |
T |
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| Q |
128 |
tggcgagtcaggaggctcttgtgcaaaaattgctt------gaacgaaaatatgaggagcaattggcccaatttaagcaagcac |
205 |
Q |
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| T |
40542790 |
tggcgagtcacgaggccgttgtgcaagatttgcttagccgacaacgaaaatatgaggagcaactgactcagtttaggcaagcac |
40542707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 40542625 - 40542574
Alignment:
| Q |
312 |
gaggaggtggagagcgacgatgaggattgaagatggacccctgttgatgtgt |
363 |
Q |
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| T |
40542625 |
gaggaggtggagagcgacgatgaagattgaagttggacccttgatgatgtgt |
40542574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 7781826 - 7781711
Alignment:
| Q |
28 |
accctgaatcatggtgaggggtcctcacaccagcctgagatgacccatgaaatgcgcgagctgattcaaaaattgacacaagagcagctcatacaacaaa |
127 |
Q |
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||||| ||||||||||| || ||||| || ||||||| | |||||| ||| ||||| || || ||||||| |||||| ||||||||||||| || |||| |
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| T |
7781826 |
acccttaatcatggtgaaggatcctcccagcagcctgcgctgacccctgagatgcgtgaccttattcaaagattgactcaagagcagctcacccagcaaa |
7781727 |
T |
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| Q |
128 |
tggcgagtcaggaggc |
143 |
Q |
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| T |
7781726 |
tggcgagacacgaggc |
7781711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 6660003 - 6659817
Alignment:
| Q |
28 |
accctgaatcatggtgaggggtcctcacaccagcctgagatgacccatgaaatgcgcgagctgattcaaaaattgacacaagagcagctcatacaacaaa |
127 |
Q |
| |
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||||| |||||||| || || ||||| || ||||||| |||||| ||| ||||| || || ||||||| |||||| ||||||||||||| || |||| |
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| T |
6660003 |
acccttaatcatggcgaaggatcctcccagcagcctgcactgacccctgagatgcgtgaccttattcaaagattgactcaagagcagctcacccagcaaa |
6659904 |
T |
|
| Q |
128 |
tggcgagtcaggaggctcttgtgcaaaaattgctt------gaacgaaaatatgaggagcaattggcccaatttaagcaagcacatg |
208 |
Q |
| |
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||||||| || ||||| |||| ||| | |||||| |||||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
6659903 |
tggcgagacatgaggccgttgtacaagatttgcttagccgccaacgaacatatgaggagcaattggctcaatttcggcaagcacatg |
6659817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 7357338 - 7357275
Alignment:
| Q |
255 |
cacacaggagcgccgactctgaacgacaatgatgacccttatcctatttatgatgaagaggagg |
318 |
Q |
| |
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|||||| ||||||||| ||||||||||||||| ||||||||| | || |||| ||||||||||| |
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| T |
7357338 |
cacacaagagcgccgattctgaacgacaatgaagacccttattcgatctatggtgaagaggagg |
7357275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 7430576 - 7430451
Alignment:
| Q |
28 |
accctgaatcatggtgaggggtcctcacaccagcctgagatgacccatgaaatgcgcgagctgattcaaaaattgacacaagagcagctcatacaacaaa |
127 |
Q |
| |
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||||| ||||||||||| || |||| || ||||||||| |||| | || ||||| ||||| ||||| | |||||||||||||||| ||| || || | |
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| T |
7430576 |
accctcaatcatggtgaaggaacctcccagcagcctgagctgacgccagagatgcgggagcttattcatagattgacacaagagcagttcacgcagcaga |
7430477 |
T |
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| Q |
128 |
tggcgagtcaggaggctcttgtgcaa |
153 |
Q |
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|||||||||| | ||| ||||||||| |
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| T |
7430476 |
tggcgagtcaagcggcccttgtgcaa |
7430451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 6052679 - 6052593
Alignment:
| Q |
28 |
accctgaatcatggtgaggggtcctcacaccagcctgagatgacccatgaaatgcgcgagctgattcaaaaattgacacaagagcag |
114 |
Q |
| |
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||||| ||||||||||| || | ||| || ||||||||| |||||| || ||||| ||||| ||||| | |||||||||||||||| |
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| T |
6052679 |
accctcaatcatggtgaaggattctcccagcagcctgagctgaccccagagatgcgggagcttattcatagattgacacaagagcag |
6052593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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