View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17099_high_8 (Length: 320)
Name: NF17099_high_8
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 25 - 303
Target Start/End: Complemental strand, 16032015 - 16031735
Alignment:
| Q |
25 |
caaatttaacacttcttccaagtttgactaatctctcatcacattaa-aatggatcccttcgtttcccaatactaagttttgttttc-ctttccaaaggt |
122 |
Q |
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| T |
16032015 |
caaatttaacacttcttccaagtttgactaatctctcatcacattaacaatggatcccttcgtttcccaatactaagtttttttttctctttccaaaggt |
16031916 |
T |
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| Q |
123 |
tgattacaacccaaaggtcaaattaattgaagtatataaagttgagagtatccattcatctttattttctcagctaccgtcctattcgagttcaaattat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16031915 |
tgattacaacccaaaggtcaaattaattgaagtatataaagtggagagtatccattcatccttattttctcagctaccgtcctattcgagttcaaattat |
16031816 |
T |
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| Q |
223 |
ttttctttttatatttgtaatattgtagagggctctatcaccttaaacaaactagacagagcaacccaacaatgtttcttc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16031815 |
ttttctttttatatttgtaatattgtagagggctctatcaccttaaacaaactagacagagcaacccaacaaagtttcttc |
16031735 |
T |
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