View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17099_low_1 (Length: 686)
Name: NF17099_low_1
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 14 - 471
Target Start/End: Complemental strand, 28507308 - 28506853
Alignment:
| Q |
14 |
caaaggacgtggagtggtatgcactgattgggtcccacaaatgaagatattaggtcacatagcagttggtggattcttgactcatgcagggtggacatcg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28507308 |
caaaggacgtggagtggtatgcactgattgggtcccacaaatgaagatattaggtcacatggcagttggtggattcttgactcatgcagggtggacatcg |
28507209 |
T |
|
| Q |
114 |
gtggtagaggccgttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggt |
213 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28507208 |
gtggtagaggcagttcaacatgagaagccacttgtgttgttgacgtatctttcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggt |
28507109 |
T |
|
| Q |
214 |
actcagtgcctagagatgagagagatgggtctttcacaagtgattcagttgctcactcaattaggctgattgtggttgaagaagagggaatgatctatag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28507108 |
actcagtgcctagagatgagagagatgggtctttcacaagtgattcggttgctcactcaattaggctgattgtggttgaagaagagggaatgatctatag |
28507009 |
T |
|
| Q |
314 |
agaaaatattaagaacatgaaggacttgtttgtcaatatggaaagacaagataaatatgttaatgacttgttgagccacctgacaagtcttttgaaacac |
413 |
Q |
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| T |
28507008 |
agaaaatattaagaacatgaaggacttgtttgtcaatattgaaagacaagataaatatgttaataacttgttgagccaccttacaagtcttttgaaacac |
28506909 |
T |
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| Q |
414 |
tgattgtgatgtcgactatgattgatgctaccaccttataagtgtacctttctccttt |
471 |
Q |
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| T |
28506908 |
tgattgtgatgtcgactatgattgatgctaccaccttataa--gtacctttctccttt |
28506853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 14 - 375
Target Start/End: Complemental strand, 28494762 - 28494401
Alignment:
| Q |
14 |
caaaggacgtggagtggtatgcactgattgggtcccacaaatgaagatattaggtcacatagcagttggtggattcttgactcatgcagggtggacatcg |
113 |
Q |
| |
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||||| ||||||||||||||||||||| |||| ||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
28494762 |
caaagtacgtggagtggtatgcactgaatgggccccacaaatgaagatattaagccacgtggcagttggtggattcttgactcatgcagggtggacatcg |
28494663 |
T |
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| Q |
114 |
gtggtagaggccgttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggt |
213 |
Q |
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| T |
28494662 |
gtggtagaagcagttcaacatgagaagccacttgtgttgttaacgtgtcttgcagatcaaggaataaatgcaagaatgttggaagaaaagaagatgggat |
28494563 |
T |
|
| Q |
214 |
actcagtgcctagagatgagagagatgggtctttcacaagtgattcagttgctcactcaattaggctgattgtggttgaagaagagggaatgatctatag |
313 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| | || |||||||||||||||||| ||||||||| |
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| T |
28494562 |
actcagtgcctagagatgagagagatgggtctttcacaagtgatatggtggctcactcgattaggttagttatggttgaagaagagggaaggatctatag |
28494463 |
T |
|
| Q |
314 |
agaaaatattaagaacatgaaggacttgtttgtcaatatggaaagacaagataaatatgtta |
375 |
Q |
| |
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|| |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |
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| T |
28494462 |
ggataatattaagaacatgaaggatttgtttgtcaatcctgaaagacaagatagatatgtta |
28494401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 469 - 670
Target Start/End: Complemental strand, 28506787 - 28506590
Alignment:
| Q |
469 |
ttttattataatggttattcacatgctgttagaactaaagagattgataagccgagagtttcaatgattttgatgataatacacttattctaagtgaata |
568 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28506787 |
ttttattattatggttattcaaatgctgttagaactaaagagattgataagccgatagtttcaatgattttgatgataatacacttattctaagtgaata |
28506688 |
T |
|
| Q |
569 |
agttatcctttgccattcaacaaagttatttcaagtgtggagatttaagttttcgtgtaaatgattaatttgataagaataatgatagttagtagttaga |
668 |
Q |
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| T |
28506687 |
agttatcctttcccattcaacaaagttatttcaagtgtggagatttaagttttggtgtaaatg----atttgataagaataatgatagttagtagttaga |
28506592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 14 - 371
Target Start/End: Complemental strand, 28491443 - 28491086
Alignment:
| Q |
14 |
caaaggacgtggagtggtatgcactgattgggtcccacaaatgaagatattaggtcacatagcagttggtggattcttgactcatgcagggtggacatcg |
113 |
Q |
| |
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|||||| || ||||| |||||||||||||||| || ||||||||||||||||| ||||| ||| |||||| ||||| |||| ||||| |||||||| |
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| T |
28491443 |
caaagggcgcggagttgtatgcactgattgggctccgcaaatgaagatattagggcacatggcaattggtgtgttcttttctcacgcaggttggacatca |
28491344 |
T |
|
| Q |
114 |
gtggtagaggccgttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggt |
213 |
Q |
| |
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||||| || || ||||| || |||||||||||||||||| |||| | ||||| ||| || ||||||||||| | |||||||| ||||||||||||| | |
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| T |
28491343 |
gtggtggaagcagttcaaaacgagaagccacttgtgttgatgacatttcttgtagaccagggaataaatgcgaaggtgttggaagaaaagaagatggcat |
28491244 |
T |
|
| Q |
214 |
actcagtgcctagagatgagagagatgggtctttcacaagtgattcagttgctcactcaattaggctgattgtggttgaagaagagggaatgatctatag |
313 |
Q |
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|| | ||||||||||||||| ||||||||| ||||||||||| ||||| |||| | ||||||| || || || |||||||||| || | ||| ||||| |
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| T |
28491243 |
acacggtgcctagagatgagcaagatgggtcattcacaagtgactcagtggctcgcacaattagactagttatgcttgaagaagaagggaggatatatag |
28491144 |
T |
|
| Q |
314 |
agaaaatattaagaacatgaaggacttgtttgtcaatatggaaagacaagataaatat |
371 |
Q |
| |
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||||||||||| | |||||||||||||||||||||| ||||||||||||| |||| |
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| T |
28491143 |
ggaaaatattaaagaggtgaaggacttgtttgtcaatattgaaagacaagatagatat |
28491086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 486 - 634
Target Start/End: Complemental strand, 28494276 - 28494128
Alignment:
| Q |
486 |
ttcacatgctgttagaactaaagagattgataagccgagagtttcaatgattttgatgataatacacttattctaagtgaataagttatcctttgccatt |
585 |
Q |
| |
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||||||| |||||||| ||||||||||| |||||| ||| |||||||||||||||||||| |||| ||| | || ||||| ||||| ||||| ||| |
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| T |
28494276 |
ttcacatattgttagaagtaaagagattggtaagccaagactttcaatgattttgatgatagcacacggattgttagggaatatgttatggtttgctatt |
28494177 |
T |
|
| Q |
586 |
caacaaagttatttcaagtgtggagatttaagttttcgtgtaaatgatt |
634 |
Q |
| |
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|| ||||||||||||||| ||||| ||||| ||||||||| ||||||| |
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| T |
28494176 |
cagcaaagttatttcaagagtggacttttaaattttcgtgtgaatgatt |
28494128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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