View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17099_low_11 (Length: 299)
Name: NF17099_low_11
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 45424921 - 45424766
Alignment:
| Q |
12 |
atgaatatgaattactggagaagtgtggaagttctggatttggggttattcattttttaagtgaatcatacatgtgcttagaattaagaatatgttagcc |
111 |
Q |
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| T |
45424921 |
atgaatatgaattaccggagaagtgtggaagttctggatttggggttattcattttttaagtgaatcatacatgtgcttagaattaagaatatgttagcc |
45424822 |
T |
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| Q |
112 |
attttgatgaccaccaaatatgtgtcaattaacactgcacatgtcaatgaagtttt |
167 |
Q |
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| T |
45424821 |
attttaatgaccagcaaatatgtgtcaattaacactgcacatgtcaatgaagtttt |
45424766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 282
Target Start/End: Complemental strand, 45423893 - 45423803
Alignment:
| Q |
192 |
ctaagtcttattctattaagtatgatcagctgtaagaatcaaacaatgtcataatgttttatnnnnnnnttatatatttttgtaattcatt |
282 |
Q |
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| T |
45423893 |
ctaagtcttattctattaagtatgatcagctataagaatcaaacgatgtcataatattttataaaaaaaatatatatttttgtaattcatt |
45423803 |
T |
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