View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17099_low_12 (Length: 291)
Name: NF17099_low_12
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_low_12 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 11623022 - 11622770
Alignment:
| Q |
19 |
gcatgaatttggtttctaattccatgagaaaaagtgtcaaaagactatgatattgtctttcattgttatgttggtcattagtattatagagtgtctgaac |
118 |
Q |
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| T |
11623022 |
gcatgaatttggtttctaattccatgagaaaaagtgtcaaaagactatgatattgtctttcattgttatgttggtcattagtat-atatagtgtctgaac |
11622924 |
T |
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| Q |
119 |
tctgaatggtaaaatgaaatattgataccaaaatctgatctatatctgatgaagtgaccttattacaatat--tcaactgaaaaactataggaataaaat |
216 |
Q |
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| T |
11622923 |
tctgaatggtaaaatgaaatattgataccaaaatctgatctatatctgatgaagtgaccttattacaatattctcaactgaaaaactataggaataaaat |
11622824 |
T |
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| Q |
217 |
catgccaatgattttaatnnnnnnnntcataacaatgattggaatattaggtct |
270 |
Q |
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| T |
11622823 |
catgccaatgattttaataaaaaaaatcataacaatgattggaatattaggtct |
11622770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 11627592 - 11627671
Alignment:
| Q |
136 |
aatattgataccaaaatctgatctatatctgatgaagtgaccttattacaatattcaactgaaaaactataggaataaaa |
215 |
Q |
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| T |
11627592 |
aatattgatactgaaatctgatcggtatcggaagaagtaatcttcttacaatattcaattgcaaaactataggaataaaa |
11627671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 17626 - 17580
Alignment:
| Q |
19 |
gcatgaatttggtttctaattccatgagaaaaagtgtcaaaagacta |
65 |
Q |
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| T |
17626 |
gcatgaatttggtttctagtttcatgagaaaaagtatcaaaggacta |
17580 |
T |
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