View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17099_low_15 (Length: 238)
Name: NF17099_low_15
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 42204498 - 42204735
Alignment:
| Q |
1 |
ggatcagaagcaggttaaaataggacctgatcttgtaactgtgtcnnnnnnntttacaagttttttactctctagtaaaaactcatttgtttagaattta |
100 |
Q |
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| T |
42204498 |
ggatcagaggcaggtgaaaataggacctgatcttgtaactgtgtcaaaaaattttacaagttttttactctctagtaaaaactcatttgtttagaattta |
42204597 |
T |
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| Q |
101 |
tggaactgaaatttatgtgcgtcataatgtaaatgatgagtatttgtctgagttgcaatctaccggtgttggtgaaggaggagatgaaattaatactatt |
200 |
Q |
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| T |
42204598 |
tggaactgaaatttatgtgcgtcataatgtaaatgatgagtatttgtctgtgttgcaatctaccggtgttggtgaaggaggagatgaaattaatactatt |
42204697 |
T |
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| Q |
201 |
tcaatatcttagtttggattttttgaaaaccatgttaa |
238 |
Q |
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| T |
42204698 |
tcaatatcttagtttggattttttgaaaaccatgttaa |
42204735 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 28915511 - 28915562
Alignment:
| Q |
170 |
tggtgaaggaggagatgaaattaatactatttcaatatcttagtttggattt |
221 |
Q |
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| T |
28915511 |
tggtgaaggaggagatgacattgataccattccaatatcttagtttagattt |
28915562 |
T |
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