View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17099_low_16 (Length: 235)
Name: NF17099_low_16
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_low_16 |
 | |
|
| [»] scaffold0144 (2 HSPs) |
| | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
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|
| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: scaffold0144 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 56 - 226
Target Start/End: Complemental strand, 37481 - 37311
Alignment:
| Q |
56 |
gcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37481 |
gcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttt |
37382 |
T |
|
| Q |
156 |
tgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgat |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37381 |
tgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgat |
37311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37512 - 37570
Alignment:
| Q |
1 |
gatgtcatcatcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaa |
59 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37512 |
gatgtcatcatcagataactgtgctaaaggatgaaccttagttcccatgatggatgcaa |
37570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 56 - 226
Target Start/End: Complemental strand, 16658003 - 16657833
Alignment:
| Q |
56 |
gcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttt |
155 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16658003 |
gcaaatagagaagggcgtgcagatcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttt |
16657904 |
T |
|
| Q |
156 |
tgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgat |
226 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16657903 |
tacgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgat |
16657833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 56 - 226
Target Start/End: Original strand, 16868170 - 16868340
Alignment:
| Q |
56 |
gcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868170 |
gcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttt |
16868269 |
T |
|
| Q |
156 |
tgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgat |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16868270 |
tgcgctttaaaagcgatgaacatcaatggacttctgtggtggaaagtgagttttggaatttagcagatgat |
16868340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 17069497 - 17069335
Alignment:
| Q |
56 |
gcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttt |
155 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069497 |
gcaaagagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttt |
17069398 |
T |
|
| Q |
156 |
tgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069397 |
tgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttag |
17069335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 56 - 202
Target Start/End: Complemental strand, 16837671 - 16837525
Alignment:
| Q |
56 |
gcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837671 |
gcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttt |
16837572 |
T |
|
| Q |
156 |
tgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837571 |
tgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagt |
16837525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 56 - 217
Target Start/End: Complemental strand, 16797160 - 16796999
Alignment:
| Q |
56 |
gcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttt |
155 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16797160 |
gcaaatagagaagagcgtgcagagcttgtggcaataggcaagaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagcagtt |
16797061 |
T |
|
| Q |
156 |
tgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaattta |
217 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
16797060 |
tgcgctttacaagcgacgaacatcaatggatttctgtactggaaagtgaattttggaattta |
16796999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 16787956 - 16787787
Alignment:
| Q |
58 |
aaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttg |
157 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
16787956 |
aaatagagaagaacgtgcagagcttgtggaaataggcaagaagttagtgagaaaatgtgtgggttcaactcttgctgctaaagtattgggaagcagtttg |
16787857 |
T |
|
| Q |
158 |
cgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgatg |
227 |
Q |
| |
|
|| |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |||| |
|
|
| T |
16787856 |
cgatttacaagcgacgaacatcaatggatttctgtactggaaagtgagttttggaatttaactgaggatg |
16787787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 18806367 - 18806522
Alignment:
| Q |
57 |
caaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagcctttt |
156 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| || |||||| | ||||||||||| |
|
|
| T |
18806367 |
caaatagagaagagcgagcagagcttgtggcaataggcaaggagttagtgagaaaatgtgtgggttcacctcttgccgcaaaagtactaggaagcctttt |
18806466 |
T |
|
| Q |
157 |
gcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttgga |
212 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
18806467 |
gcgctttaaaactgaggaacatcaatggctttctgtaaaggaaagtaagttttgga |
18806522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 18873361 - 18873516
Alignment:
| Q |
57 |
caaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagcctttt |
156 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||| |||||||| || |||||| | ||||||||||| |
|
|
| T |
18873361 |
caaatagagaagagcgtgcagagcttgtggcaataggcaaggagttagtgagaaaatgtgtgggttctcctcttgccgcaaaagtactaggaagcctttt |
18873460 |
T |
|
| Q |
157 |
gcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttgga |
212 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
18873461 |
gcgctttaaaactgaggaacatcaatggctttctgtaaaggaaagtaagttttgga |
18873516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 16987443 - 16987274
Alignment:
| Q |
58 |
aaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttg |
157 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16987443 |
aaatggagaagagcgtgcagagcttgtggaaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttg |
16987344 |
T |
|
| Q |
158 |
cgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgatg |
227 |
Q |
| |
|
| | ||| || |||||||||||||||||||| ||||||||||| ||||||||||| |||| |||| |
|
|
| T |
16987343 |
caacgtgaaactgacgaacatcaatggatttctgtactggaaagtgagatttggaatttacctgaggatg |
16987274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 16781073 - 16780924
Alignment:
| Q |
73 |
tgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgat |
172 |
Q |
| |
|
||||||||||| | ||||||| | || |||||| |||||||||||||||||| |||||||| || || ||||||||||||||||||||||||| || |
|
|
| T |
16781073 |
tgcagagcttgcagcaataggcaaggagatagtgataaaatgtgtgggttcaccacttgctgccaaggttttgggaagccttttgcgctttaaaaatgag |
16780974 |
T |
|
| Q |
173 |
gaacatcaatggatttctgtggtggaaagtgagttttggaatttagctga |
222 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||| ||| |||| |
|
|
| T |
16780973 |
gaacatcaatggctttctgtaaaggaaagtgagctttggaagttatctga |
16780924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16658034 - 16658092
Alignment:
| Q |
1 |
gatgtcatcatcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaa |
59 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658034 |
gatgtcatcatcagataactgtgctaaaggatgaaccttagttcccatgatggatgcaa |
16658092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16837702 - 16837760
Alignment:
| Q |
1 |
gatgtcatcatcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaa |
59 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837702 |
gatgtcatcatcagataactgtgctaaaggatgaaccttagttcccatgatggatgcaa |
16837760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16868139 - 16868081
Alignment:
| Q |
1 |
gatgtcatcatcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaa |
59 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868139 |
gatgtcatcatcagataactgtgctaaaggatgaaccttagttcccatgatggatgcaa |
16868081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 16843748 - 16843627
Alignment:
| Q |
102 |
tagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaag |
201 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||| | ||||||||| |||| ||||||| || ||| ||||||| ||||| | |||||| |
|
|
| T |
16843748 |
tagttagaaaatgtgtgggttcgcctcttgctgccaaagtactaggaagccttctgcggtttaaaactgaggaatgtcaatggctttctataaaggaaag |
16843649 |
T |
|
| Q |
202 |
tgagttttggaatttagctgat |
223 |
Q |
| |
|
|||| ||||||||||| ||||| |
|
|
| T |
16843648 |
tgagatttggaatttatctgat |
16843627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16797191 - 16797249
Alignment:
| Q |
1 |
gatgtcatcatcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaa |
59 |
Q |
| |
|
||||||||||||| ||||| ||| |||| ||||||| | |||||||||||||||||||| |
|
|
| T |
16797191 |
gatgtcatcatcagataaccgtgttaaatgatgaacataagttcccatgatggatgcaa |
16797249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 12840 - 12674
Alignment:
| Q |
56 |
gcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttt |
155 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
12840 |
gcaaatagagaagagcgtgcagagcttgtggcaataggcaaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattaggaagcagtt |
12741 |
T |
|
| Q |
156 |
tgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctga |
222 |
Q |
| |
|
|| |||||| ||| || |||||||||||||||||||| | |||||||||||||||| |||| |||| |
|
|
| T |
12740 |
tgtgctttacaagtgacgaacatcaatggatttctgtactagaaagtgagttttggagtttacctga |
12674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 58 - 216
Target Start/End: Complemental strand, 8496 - 8338
Alignment:
| Q |
58 |
aaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttg |
157 |
Q |
| |
|
|||| |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
8496 |
aaatcgagaagagcgtgcagagcttgtggcaataggcaaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggtagcagtttg |
8397 |
T |
|
| Q |
158 |
cgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaattt |
216 |
Q |
| |
|
||| || |||| | |||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
8396 |
tgctgtacaagcaacgaacatcaatggatttctgtactggaaagtgaattttggaattt |
8338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 18000 - 17880
Alignment:
| Q |
102 |
tagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaag |
201 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || || |||||||||||| ||||||||||||| || |||||||||||| ||||||| |||||| |
|
|
| T |
18000 |
tagtgagaaaatgcgtgggttcacctcttgctgccaaggttttgggaagccttctgcgctttaaaagtgaggaacatcaatggctttctgtaaaggaaag |
17901 |
T |
|
| Q |
202 |
tgagttttggaatttagctga |
222 |
Q |
| |
|
|||| ||||||||||| |||| |
|
|
| T |
17900 |
tgaggtttggaatttatctga |
17880 |
T |
|
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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 38939546 - 38939695
Alignment:
| Q |
73 |
tgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgat |
172 |
Q |
| |
|
|||||||||||| | ||||||| | || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
38939546 |
tgcagagcttgtagcaataggcaaggagatagtgagaaaatgtgtgggttcacctcttgctgccaaagtattgggaagccttttgcgctttaaaagtgag |
38939645 |
T |
|
| Q |
173 |
gaacatcaatggatttctgtggtggaaagtgagttttggaatttagctga |
222 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
38939646 |
gaacatcaatggttttctgtaaaggaaagtgagctttggaatttatctga |
38939695 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 7053437 - 7053602
Alignment:
| Q |
57 |
caaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagcctttt |
156 |
Q |
| |
|
||||| |||||| || ||||||||||| ||||||| | || ||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
7053437 |
caaatggagaagagcatgcagagcttgccacaataggcaaggagatagtgagaaaatgtgtgggttcacctcttgcagcaaaagtattaggaagcctttt |
7053536 |
T |
|
| Q |
157 |
gcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctga |
222 |
Q |
| |
|
|| |||||| | || ||||||||||| ||||| | |||||| |||||||||||||| |||| |
|
|
| T |
7053537 |
acgatttaaacgtgagaaacatcaatggctttctataaaggaaagcaagttttggaatttatctga |
7053602 |
T |
|
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Target: scaffold0230 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 57 - 212
Target Start/End: Complemental strand, 4663 - 4507
Alignment:
| Q |
57 |
caaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagcc-ttt |
155 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||| |||||| | ||||||| ||| |
|
|
| T |
4663 |
caaatagagaagagcgtgcagagcttgtggcaataggcaaggagttagtgagaaaatgtgtgggttcgcctcttgctgccaaagtactaggaagcctttt |
4564 |
T |
|
| Q |
156 |
tgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttgga |
212 |
Q |
| |
|
||||||||||||| || |||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
4563 |
tgcgctttaaaagtgaggaacatcaatggctttctgtaaaggaaagtaagttttgga |
4507 |
T |
|
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Target: scaffold0511 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 57 - 192
Target Start/End: Complemental strand, 9343 - 9208
Alignment:
| Q |
57 |
caaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagcctttt |
156 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||| |||||||| || |||||| | ||||| ||||| |
|
|
| T |
9343 |
caaatagagaagagcgtgcagagcttgtggcaataggcaaggagttagtgagaaaatgtgtgggttcgcctcttgccgccaaagtactaggaagtctttt |
9244 |
T |
|
| Q |
157 |
gcgctttaaaagcgatgaacatcaatggatttctgt |
192 |
Q |
| |
|
|||||||||||| || |||||||||||| ||||||| |
|
|
| T |
9243 |
gcgctttaaaagtgaggaacatcaatggctttctgt |
9208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 13378073 - 13377916
Alignment:
| Q |
65 |
gaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgcttta |
164 |
Q |
| |
|
|||| |||||||||||||| | ||||||| | || |||||||||||||||||||||||||||||||||| || || ||||||||||||| |||||||| |
|
|
| T |
13378073 |
gaagagcgtgcagagcttgcagcaataggcaaggagatagtgagaaaatgtgtgggttcacctcttgctgccaaggttttgggaagcctttcgcgcttta |
13377974 |
T |
|
| Q |
165 |
aaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctga |
222 |
Q |
| |
|
|||| || |||||||||||| ||||||| ||||||| || ||||||||||| |||| |
|
|
| T |
13377973 |
aaagtgaggaacatcaatggctttctgtaaaggaaagtaagctttggaatttatctga |
13377916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 9094 - 8971
Alignment:
| Q |
104 |
gtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||| || |||||||||||| | ||||| |||||||| |
|
|
| T |
9094 |
gtgagaaaatgtgtgggttcacctcttgctgccaaagtattgggaagtcttttgtgctttaaaagtgaggaacatcaatggctctctgtcaaggaaagtg |
8995 |
T |
|
| Q |
204 |
agttttggaatttagctgatgatg |
227 |
Q |
| |
|
|| ||||||||||| |||| |||| |
|
|
| T |
8994 |
agctttggaatttaactgaggatg |
8971 |
T |
|
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 30207120 - 30207085
Alignment:
| Q |
58 |
aaatagagaagggcgtgcagagcttgtggaaatagg |
93 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30207120 |
aaatagagaagagcgtgcagagcttgtggaaatagg |
30207085 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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