View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17099_low_18 (Length: 225)
Name: NF17099_low_18
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 33089634 - 33089841
Alignment:
| Q |
1 |
ctttgttgcttaaggaaatgaatgttgagtcattggcaaaaattgaagggattgttgaatctttggtcaacatggttaaggttaatgttgagattgggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33089634 |
ctttgttgcttaaggaaatgaatgttgagtcattggcaaaaattgaagggattgttgaatctttggtcaacatggttaaggttaatgttgagattgggag |
33089733 |
T |
|
| Q |
101 |
tgcttctacaaaagcatgtttatcaacaatttttcatttggtttactcatcaaagagtaaaaaagtgattttggagaggtttgttgaattgggtttggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33089734 |
tgcttctacaaaagcatgtttatcaacaatttttcatttggtttactcatcaaagagtaaaaaagtgattttggagaggtttgttgaattgggtttggtt |
33089833 |
T |
|
| Q |
201 |
tcaatttt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
33089834 |
tcaatttt |
33089841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University