View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17099_low_3 (Length: 558)
Name: NF17099_low_3
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 11 - 542
Target Start/End: Original strand, 46471243 - 46471761
Alignment:
| Q |
11 |
cagagatgcaattcatccaaaaatgaccggttcacatattagagctatactcattactc-actgtaatttttggagtttcctgcttagaaccttgggtta |
109 |
Q |
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| T |
46471243 |
cagagatgcaattcatccaaaaatgaccggttcacagattagagctatactcattactctactgtaatttttggagtttcctgcttagaaccttgggtta |
46471342 |
T |
|
| Q |
110 |
tactcggtttcctgattagaattgggacaaactcatattgtaaatgtcattctattagattaatatctatagttttagtattggtatgatgccgaaatta |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471343 |
tactcggtttcctgattagaattgggacaaactcatattgtaaatgtcattctattagattaatatctatagttttagtattggtatgatgccgaaattg |
46471442 |
T |
|
| Q |
210 |
gccatcatcaagaaacataaatgtgatagggatatgcactcagaatacatatttccgcattaaccttattttatgttataggttgctgaaaatacagtat |
309 |
Q |
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| T |
46471443 |
gccatcatcaagaaacataaatgtgatagggatatgcactcagaatacatatttccgcattaaccttattttatgttataggttgctgtaaatacagtat |
46471542 |
T |
|
| Q |
310 |
tacaagatgagagggagattctaggccacataatcaagtctacaaatatgaagtgcctgactccaccgtgagttcctttaacttgcatacactttatgaa |
409 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471543 |
tacaagatgagagggagat--------------tcaagtctacaaatatgaagtgcctgactccaccgtgagttcctttaacttgcatacactttatgaa |
46471628 |
T |
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| Q |
410 |
tggtattgtgtgtgtgcctgtgcttgagtatctaatgccaggattctgtctttttgaaggaaaaatgtttttcaatttaaaagcaggtctaaaaatgaaa |
509 |
Q |
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| T |
46471629 |
tggtattgtgtgtgtgcctgtgcttgagtatctaatgccaggattctgtctttttgaaggaaaaatgtttttcaatttaaaagcaggcctaaaaatgaaa |
46471728 |
T |
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| Q |
510 |
tattactaattgtgggagtcattagtatttctg |
542 |
Q |
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| T |
46471729 |
tattactaattgtgggagtcattagtatttctg |
46471761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 277 - 418
Target Start/End: Original strand, 1475170 - 1475311
Alignment:
| Q |
277 |
attttatgttataggttgctgaaaatacagtattacaagatgagagggagattctaggccacataatcaagtctacaaatatgaagtgcctgactccacc |
376 |
Q |
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|||| |||||||||||||||| |||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1475170 |
atttcatgttataggttgctgtaaatacagtattgcaagacgagagggagtttctgggccacattatcaagtctacaaatatgaagtgcctgactccacc |
1475269 |
T |
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| Q |
377 |
gtgagttcctttaacttgcatacactttatgaatggtattgt |
418 |
Q |
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| T |
1475270 |
gtgagttcctttaacttgcataaactttatgactgttattgt |
1475311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 1474869 - 1474954
Alignment:
| Q |
11 |
cagagatgcaattcatccaaaaatgaccggttcacatattagagctatactcattactcactgtaatttttggagtttcctgcttag |
97 |
Q |
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|||| ||||||||||||||||||||| | ||||| |||||||||| ||||||| || || ||||||||| |||||||||||||| |
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| T |
1474869 |
cagacatgcaattcatccaaaaatgattgagtcacagattagagctacactcattgcttgct-taatttttgtagtttcctgcttag |
1474954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 327 - 408
Target Start/End: Complemental strand, 20743959 - 20743878
Alignment:
| Q |
327 |
attctaggccacataatcaagtctacaaatatgaagtgcctgactccaccgtgagttcctttaacttgcatacactttatga |
408 |
Q |
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| T |
20743959 |
attctgggccacattatcaagtctacaaatatgaagtgcctgaccccaccgtgagttcctttaacttgcataaactttatga |
20743878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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