View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17099_low_5 (Length: 405)
Name: NF17099_low_5
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 47016236 - 47015848
Alignment:
| Q |
1 |
gcacgactcgcagcaatatcacgaacacgtaattgagaatctagaatctgacacagtaatacttaccatgtttttggccaagaattaatttgattggtta |
100 |
Q |
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| T |
47016236 |
gcacgactcgcagcaatatcacgaacacgtaattgagaatctagaatctgacacagtaatacttaccatgtttttggccaagaattaatttgattggtta |
47016137 |
T |
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| Q |
101 |
actataattcatgagctttttgtgaagaaacatttcgtggtaaatagcaccaaagaaagattctcaatgtcaacaatactccatatgatatttgtcaaaa |
200 |
Q |
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| T |
47016136 |
actataattcatgagctttttgtgaagaaacatttcgtggtaaatagcaccaaagaaagattctcaatgtcaacaatactccatatgatatttgtcaaaa |
47016037 |
T |
|
| Q |
201 |
ctccaattgaatcatttgttgacgagaaatgctattctttacaaagaaaatctgtccataaaatgcaagaatgtaaacgtggaatctgttccttttttac |
300 |
Q |
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| T |
47016036 |
ctccaattgaatcatttgttgacgagaaatgctattctttacaaagaaaatctgtccataaaatgcaagaatgtaaacgtggaatctgttccttttttac |
47015937 |
T |
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| Q |
301 |
tcttacaaatattaattgaaattaaaatataacagtttttggcggaatacatgatcatgttgttttaacgaaatccaacaatcagtatt |
389 |
Q |
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| T |
47015936 |
tcttacaaatattaattgaaattaaaatataacagtttttggcggaatacatgatcatgttgttttaacgaaatccaacaatcagtatt |
47015848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 47016277 - 47016237
Alignment:
| Q |
5 |
gactcgcagcaatatcacgaacacgtaattgagaatctaga |
45 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
47016277 |
gactcgcagatatatcacgaacacgtaattgagaatctaga |
47016237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 47016322 - 47016282
Alignment:
| Q |
5 |
gactcgcagcaatatcacgaacacgtaattgagaatctaga |
45 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||| |
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| T |
47016322 |
gactcgcagcaataccacgagcacgtaattgagaatctaga |
47016282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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