View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17099_low_9 (Length: 315)
Name: NF17099_low_9
Description: NF17099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17099_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 306
Target Start/End: Complemental strand, 2623725 - 2623442
Alignment:
| Q |
23 |
agtgcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaatta |
122 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||| ||| | |||||||||||||||||||| |
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| T |
2623725 |
agtgcaatgtgtttccttaatgaccttagattataagtttttatgtctctgccatcaattgtcactatcccttcaagtggatcatagaacctctcaatta |
2623626 |
T |
|
| Q |
123 |
gtcctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacatt |
222 |
Q |
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||||||||||||||||||||||||||||||||| ||| | || | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
2623625 |
gtcctatgatcgttgatttcccagaaccacttttccctaccagagctgtcgattttccagcatcaaatttaatcgaaaatccttgaaaaatcatcacatt |
2623526 |
T |
|
| Q |
223 |
aggtctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttctatttcatc |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
2623525 |
aggtctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttatagctttgtgaccttctatttcatc |
2623442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 306
Target Start/End: Complemental strand, 2592181 - 2591898
Alignment:
| Q |
23 |
agtgcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaatta |
122 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| ||||||||||||| || ||||||||||||||||||| ||| | |||||||||||||||||||| |
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| T |
2592181 |
agtgcaatgtgtttccttagtgaccttagattataaatttttatgtccctaccatcaattgtcactatccctttaagtggatcatagaacctctcaatta |
2592082 |
T |
|
| Q |
123 |
gtcctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||| || | ||| |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2592081 |
gtcctatgatcgttgatttcccagaaccactttctcctaccaacgctgttgattttccggcatcaattttaatcgagaatccttcaaaaatcatcacatt |
2591982 |
T |
|
| Q |
223 |
aggtctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttctatttcatc |
306 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2591981 |
tggtctagacggatatgcaaaataaacatcacaaaattcaatttttcctattaacttttcagctttgtaaccttctatttcatc |
2591898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 23 - 295
Target Start/End: Original strand, 2569089 - 2569361
Alignment:
| Q |
23 |
agtgcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaatta |
122 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| || |||||||| || || ||||||||||||||||||| ||| | ||||||||| || ||||| | |
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| T |
2569089 |
agtgcaatgtgttcccttaatgaccttagattatatgtctttatgtctctaccatcaattgtcactatccctttaagtggatcatagaatctttcaataa |
2569188 |
T |
|
| Q |
123 |
gtcctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacatt |
222 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2569189 |
gtcctatgattgttgattttccagaaccactttcccctaccaaagctgtcgattttccagcatcaattttaatcgagaacccttgaaaaatcatcacatt |
2569288 |
T |
|
| Q |
223 |
aggtctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaacct |
295 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||| ||||||| |||||||||| |||| ||||||||||||| |
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| T |
2569289 |
aggtctagccggatatgcaaaatgtacatcaaaaagttcaattattcctattaatttttcagctttgtaacct |
2569361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 26 - 299
Target Start/End: Original strand, 2672467 - 2672740
Alignment:
| Q |
26 |
gcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtc |
125 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| || |||||||| || |||||||||||||||||||||| ||| | |||||||| ||||||||||||| |
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| T |
2672467 |
gcaatgtgtttcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtc |
2672566 |
T |
|
| Q |
126 |
ctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattagg |
225 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||| | |||| | || |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2672567 |
ctatgattgtcgattttccagaaccactttcccctaccaaagccgttgattttcctgcatcaattttaatcgagaatccttgaaaaatcataacattagg |
2672666 |
T |
|
| Q |
226 |
tctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttcta |
299 |
Q |
| |
|
||||| ||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
2672667 |
tctagctggatatgaaaaatatacatcacgaagttcaatttttcctattaacttttcagcttggtaactttcta |
2672740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 23 - 299
Target Start/End: Original strand, 2596648 - 2596924
Alignment:
| Q |
23 |
agtgcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaatta |
122 |
Q |
| |
|
|||||||| |||||||||||||| | || |||||| || |||||||| || |||||||||||||||||||||| || | ||||||||| |||||||||| |
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| T |
2596648 |
agtgcaatatgtttccttaatgatcgtagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctctcaatta |
2596747 |
T |
|
| Q |
123 |
gtcctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacatt |
222 |
Q |
| |
|
||||||| || || ||||| ||||||||||||||||| | |||| | ||||||||||| |||||||||||||||||||| ||||||||||| | ||||| |
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|
| T |
2596748 |
gtcctataattgtcgattttccagaaccactttcccctaccaaagccgtcgattttcctgcatcaattttaatcgagaacccttgaaaaattgtaacatt |
2596847 |
T |
|
| Q |
223 |
aggtctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttcta |
299 |
Q |
| |
|
||||||| |||||||||||||||||||||| || |||||||||||||||||| |||| |||| |||||||||||| |
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|
| T |
2596848 |
aggtctacctggatatgcaaaatatacatcacgaagttcaatttttcctattaatttttcagctctgtaaccttcta |
2596924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 23 - 297
Target Start/End: Original strand, 2641304 - 2641578
Alignment:
| Q |
23 |
agtgcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaatta |
122 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| ||||| || || ||||||||||||||||||| || | ||||||||| |||||||||| |
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|
| T |
2641304 |
agtgcaatgtgtttccttaacgaccttagattataagactttatatcttcaccatcaattgtcactatccctttaattggatcatagaatctctcaatta |
2641403 |
T |
|
| Q |
123 |
gtcctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacatt |
222 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| | |||| | |||||||||||||| || |||||||| ||||| |||||||| ||||||||||| |
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| T |
2641404 |
gtcctatgattgttgatttccctgaaccactttccccgaccaaagccgtcgattttccagcgtcgattttaattgagaacccttgaaagatcatcacatt |
2641503 |
T |
|
| Q |
223 |
aggtctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttc |
297 |
Q |
| |
|
||||||| |||||||||||||| ||||||| || ||||||||| ||||| || ||||| |||||||||||||| |
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|
| T |
2641504 |
aggtctacccggatatgcaaaatctacatcaagaagttcaattttccctatcaaatttttggctttgtaaccttc |
2641578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 23 - 299
Target Start/End: Complemental strand, 2440235 - 2439959
Alignment:
| Q |
23 |
agtgcaatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaatta |
122 |
Q |
| |
|
|||||||| |||||||||||||| | || |||||||||||||||||| || || |||| |||||||||||||| ||| | ||||||||| |||||||||| |
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|
| T |
2440235 |
agtgcaatatgtttccttaatgatcgtagattataagtttttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaatta |
2440136 |
T |
|
| Q |
123 |
gtcctatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacatt |
222 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||| | |||| | || |||||||| || ||||||| ||| ||||| |||||||| | ||||||||| |
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|
| T |
2440135 |
gtcctatgattgtcgattttccagaaccactttccccaaccaaagccgttgattttccggcgtcaatttcaatagagaacccttgaaagaccatcacatt |
2440036 |
T |
|
| Q |
223 |
aggtctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttcta |
299 |
Q |
| |
|
||| |||| |||||||| ||||| ||| ||| |||| ||||||||||||| ||||||| |||| || ||||||||| |
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|
| T |
2440035 |
aggcctagccggatatgaaaaatgtacgtcatgaaatacaatttttcctatcaacttttcagctctgaaaccttcta |
2439959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 35 - 297
Target Start/End: Complemental strand, 2450948 - 2450686
Alignment:
| Q |
35 |
ttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcctatgatcg |
134 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| || || || ||||| ||||||||||||| | | |||||| || |||||||||||||||||||| | |
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| T |
2450948 |
ttccttaatgaccttagattataagactttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatgattg |
2450849 |
T |
|
| Q |
135 |
ttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattaggtctagacgg |
234 |
Q |
| |
|
| ||||| ||||||||||||||||| | |||| | || ||||| || ||| ||||||||||||||| |||||||| || || ||||||| |||||||| |
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|
| T |
2450848 |
tcgattttccagaaccactttccccgaccaaagccgttgatttaccgacattaattttaatcgagaacccttgaaagatgattgcattaggcctagacgg |
2450749 |
T |
|
| Q |
235 |
atatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttc |
297 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
2450748 |
atatgcaaaatgtacatcatgaaattcaatttttcctatcaacttttctactttgtaaccttc |
2450686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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