View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709R-Insertion-1 (Length: 1120)

Name: NF1709R-Insertion-1
Description: NF1709R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709R-Insertion-1
NF1709R-Insertion-1
[»] chr7 (40 HSPs)
chr7 (75-318)||(32520449-32520692)
chr7 (310-541)||(32520051-32520285)
chr7 (659-844)||(32519870-32520055)
chr7 (9-75)||(29330008-29330074)
chr7 (9-75)||(38247409-38247475)
chr7 (581-651)||(7211862-7211932)
chr7 (9-75)||(7252982-7253048)
chr7 (581-651)||(17272701-17272771)
chr7 (16-75)||(34847096-34847155)
chr7 (16-75)||(36311371-36311430)
chr7 (16-75)||(44866844-44866903)
chr7 (9-75)||(114085-114151)
chr7 (9-75)||(35582736-35582802)
chr7 (9-75)||(41793489-41793555)
chr7 (9-75)||(43744973-43745039)
chr7 (11-75)||(35795257-35795321)
chr7 (16-75)||(46255662-46255721)
chr7 (9-75)||(26794122-26794188)
chr7 (9-75)||(32523918-32523984)
chr7 (10-75)||(38001027-38001090)
chr7 (26-75)||(14815928-14815977)
chr7 (9-70)||(15030317-15030378)
chr7 (26-75)||(15262923-15262972)
chr7 (16-75)||(33951740-33951800)
chr7 (16-75)||(43458950-43459009)
chr7 (16-75)||(25528381-25528440)
chr7 (581-651)||(25099335-25099405)
chr7 (581-621)||(7211984-7212024)
chr7 (542-578)||(29681904-29681940)
chr7 (600-652)||(32315708-32315760)
chr7 (16-75)||(8166531-8166590)
chr7 (582-641)||(29681777-29681836)
chr7 (544-578)||(17272830-17272864)
chr7 (76-156)||(26525537-26525614)
chr7 (10-75)||(24686475-24686540)
chr7 (111-156)||(27215417-27215462)
chr7 (838-874)||(32518384-32518420)
chr7 (595-651)||(46282870-46282926)
chr7 (549-578)||(7211866-7211895)
chr7 (549-578)||(17272705-17272734)
[»] chr6 (31 HSPs)
chr6 (112-467)||(30710632-30710984)
chr6 (76-423)||(14503471-14503816)
chr6 (9-75)||(18574729-18574795)
chr6 (9-75)||(18584610-18584676)
chr6 (16-75)||(11975777-11975836)
chr6 (16-75)||(31319325-31319384)
chr6 (16-75)||(31722176-31722235)
chr6 (16-75)||(34540704-34540763)
chr6 (19-75)||(304565-304621)
chr6 (16-75)||(16396148-16396207)
chr6 (9-75)||(481498-481564)
chr6 (9-75)||(34951210-34951276)
chr6 (581-648)||(2543829-2543896)
chr6 (16-75)||(9304273-9304332)
chr6 (16-75)||(31272061-31272120)
chr6 (9-75)||(29437305-29437371)
chr6 (584-647)||(369508-369571)
chr6 (16-75)||(439858-439917)
chr6 (581-651)||(11448059-11448129)
chr6 (541-578)||(2543734-2543771)
chr6 (542-578)||(16193852-16193888)
chr6 (542-579)||(369541-369578)
chr6 (542-582)||(5150619-5150659)
chr6 (542-578)||(11448188-11448224)
chr6 (542-578)||(28581731-28581767)
chr6 (586-641)||(2980786-2980841)
chr6 (103-153)||(17304352-17304402)
chr6 (581-654)||(35049737-35049811)
chr6 (586-615)||(178672-178701)
chr6 (549-578)||(2543866-2543895)
chr6 (584-625)||(16193758-16193799)
[»] chr8 (30 HSPs)
chr8 (112-293)||(8240559-8240740)
chr8 (9-75)||(42191556-42191622)
chr8 (9-75)||(24834972-24835038)
chr8 (16-75)||(8239260-8239319)
chr8 (16-75)||(28249549-28249608)
chr8 (16-75)||(39259575-39259634)
chr8 (16-75)||(39317891-39317950)
chr8 (16-75)||(43097799-43097858)
chr8 (16-75)||(6348120-6348179)
chr8 (16-71)||(11076991-11077046)
chr8 (16-75)||(13545527-13545586)
chr8 (16-75)||(13678887-13678946)
chr8 (16-75)||(35683289-35683348)
chr8 (16-75)||(40104521-40104581)
chr8 (19-75)||(42131197-42131253)
chr8 (16-75)||(23143400-23143459)
chr8 (16-75)||(31700301-31700360)
chr8 (16-75)||(225474-225533)
chr8 (16-75)||(701887-701946)
chr8 (16-75)||(739097-739156)
chr8 (16-75)||(862992-863051)
chr8 (16-71)||(20092682-20092737)
chr8 (16-75)||(32338636-32338695)
chr8 (16-75)||(37099128-37099187)
chr8 (582-621)||(43465118-43465157)
chr8 (542-578)||(1605046-1605082)
chr8 (540-584)||(43465214-43465258)
chr8 (16-75)||(38224692-38224751)
chr8 (540-578)||(16687510-16687548)
chr8 (596-642)||(45051339-45051385)
[»] chr5 (39 HSPs)
chr5 (258-441)||(19576584-19576770)
chr5 (9-75)||(1708979-1709045)
chr5 (9-75)||(22192623-22192689)
chr5 (9-73)||(5336464-5336528)
chr5 (16-75)||(8198187-8198246)
chr5 (16-75)||(8735500-8735559)
chr5 (16-75)||(12785968-12786027)
chr5 (16-75)||(16512863-16512922)
chr5 (16-75)||(25976409-25976468)
chr5 (11-72)||(8298526-8298587)
chr5 (16-73)||(38678738-38678795)
chr5 (9-73)||(24853582-24853646)
chr5 (16-75)||(3557428-3557487)
chr5 (16-75)||(12724485-12724544)
chr5 (16-75)||(18809776-18809835)
chr5 (16-75)||(26279861-26279920)
chr5 (16-75)||(37884225-37884284)
chr5 (9-75)||(6430847-6430913)
chr5 (581-651)||(9177931-9178001)
chr5 (581-630)||(1839994-1840043)
chr5 (16-73)||(37029572-37029629)
chr5 (16-75)||(20336765-20336824)
chr5 (16-75)||(27115109-27115168)
chr5 (581-630)||(29385371-29385420)
chr5 (16-72)||(11719216-11719272)
chr5 (16-75)||(17504433-17504492)
chr5 (591-648)||(5215666-5215723)
chr5 (596-653)||(25879406-25879463)
chr5 (16-73)||(27950877-27950934)
chr5 (542-578)||(5215560-5215596)
chr5 (581-641)||(23219368-23219428)
chr5 (551-582)||(1839970-1840001)
chr5 (584-654)||(896268-896338)
chr5 (37-75)||(31469903-31469941)
chr5 (16-58)||(37013579-37013621)
chr5 (584-638)||(42772054-42772108)
chr5 (541-578)||(12605678-12605715)
chr5 (549-578)||(19417442-19417471)
chr5 (549-578)||(29385417-29385446)
[»] chr3 (44 HSPs)
chr3 (125-417)||(53226199-53226486)
chr3 (581-657)||(11512383-11512459)
chr3 (10-72)||(9128437-9128499)
chr3 (10-72)||(9136544-9136606)
chr3 (9-75)||(48065719-48065785)
chr3 (9-75)||(49324988-49325054)
chr3 (10-75)||(16479005-16479070)
chr3 (9-73)||(21448327-21448391)
chr3 (8-72)||(41972442-41972506)
chr3 (16-75)||(39353913-39353972)
chr3 (16-75)||(47013035-47013094)
chr3 (16-75)||(47647722-47647781)
chr3 (16-75)||(49165376-49165435)
chr3 (9-75)||(8484110-8484175)
chr3 (9-75)||(30390501-30390567)
chr3 (9-75)||(44205128-44205194)
chr3 (9-75)||(47372446-47372512)
chr3 (19-75)||(53816743-53816799)
chr3 (16-75)||(228183-228242)
chr3 (9-75)||(3939145-3939211)
chr3 (581-630)||(20286927-20286976)
chr3 (581-654)||(31342006-31342079)
chr3 (16-75)||(41193033-41193092)
chr3 (581-651)||(22893985-22894055)
chr3 (16-74)||(36402096-36402154)
chr3 (16-66)||(39587376-39587426)
chr3 (16-75)||(26501472-26501530)
chr3 (16-73)||(6937231-6937286)
chr3 (541-578)||(22893890-22893927)
chr3 (19-75)||(31764469-31764525)
chr3 (16-75)||(32530590-32530649)
chr3 (541-578)||(11512518-11512555)
chr3 (542-577)||(31342130-31342165)
chr3 (546-580)||(5633179-5633213)
chr3 (600-630)||(7977585-7977615)
chr3 (539-577)||(20287027-20287065)
chr3 (549-579)||(22894021-22894051)
chr3 (544-582)||(41410500-41410538)
chr3 (540-578)||(48342784-48342822)
chr3 (549-578)||(11512393-11512422)
chr3 (549-582)||(20286901-20286934)
chr3 (541-578)||(36738384-36738421)
chr3 (549-578)||(48342214-48342243)
chr3 (549-578)||(49159510-49159539)
[»] chr2 (36 HSPs)
chr2 (252-422)||(43162482-43162654)
chr2 (9-75)||(5462067-5462133)
chr2 (16-75)||(1209188-1209247)
chr2 (16-75)||(6404920-6404979)
chr2 (582-657)||(15562200-15562275)
chr2 (16-75)||(45235031-45235090)
chr2 (9-75)||(43334469-43334535)
chr2 (16-75)||(13279481-13279540)
chr2 (16-75)||(17136975-17137034)
chr2 (16-75)||(31993351-31993410)
chr2 (16-75)||(45117814-45117873)
chr2 (581-651)||(7755338-7755408)
chr2 (18-75)||(15111007-15111064)
chr2 (16-75)||(15912516-15912575)
chr2 (16-75)||(38209137-38209196)
chr2 (16-75)||(44760839-44760898)
chr2 (581-630)||(39819086-39819135)
chr2 (16-75)||(1115909-1115968)
chr2 (16-75)||(5935531-5935590)
chr2 (16-75)||(30490042-30490100)
chr2 (16-75)||(38702880-38702939)
chr2 (25-75)||(7940816-7940866)
chr2 (252-395)||(43172247-43172390)
chr2 (581-630)||(12918556-12918605)
chr2 (542-578)||(12918664-12918700)
chr2 (542-578)||(39819194-39819230)
chr2 (540-577)||(7755459-7755496)
chr2 (26-75)||(34950842-34950891)
chr2 (35-75)||(16415296-16415336)
chr2 (540-578)||(5913513-5913551)
chr2 (581-647)||(13421775-13421841)
chr2 (549-579)||(13421811-13421841)
chr2 (549-578)||(7755342-7755371)
chr2 (542-578)||(12918498-12918535)
chr2 (10-75)||(31715168-31715233)
chr2 (549-578)||(39819060-39819089)
[»] chr4 (52 HSPs)
chr4 (9-75)||(47984204-47984270)
chr4 (10-75)||(4353389-4353454)
chr4 (9-75)||(38988371-38988437)
chr4 (10-75)||(45657197-45657262)
chr4 (10-75)||(53271650-53271715)
chr4 (10-75)||(55609798-55609863)
chr4 (16-75)||(1603588-1603647)
chr4 (16-75)||(4189160-4189219)
chr4 (16-75)||(6964257-6964316)
chr4 (16-75)||(9035372-9035431)
chr4 (16-75)||(31093904-31093963)
chr4 (16-75)||(38217557-38217616)
chr4 (16-75)||(45229874-45229933)
chr4 (16-75)||(49375121-49375180)
chr4 (16-75)||(52502213-52502272)
chr4 (9-75)||(13753070-13753136)
chr4 (9-75)||(53513089-53513155)
chr4 (11-75)||(5419628-5419692)
chr4 (19-75)||(30004365-30004421)
chr4 (16-71)||(167806-167861)
chr4 (16-75)||(4048941-4049000)
chr4 (16-75)||(15542094-15542153)
chr4 (16-75)||(28780059-28780118)
chr4 (16-75)||(35319151-35319210)
chr4 (9-75)||(40690691-40690757)
chr4 (9-75)||(47605195-47605261)
chr4 (9-75)||(51889967-51890033)
chr4 (581-630)||(31846877-31846926)
chr4 (9-70)||(44109377-44109438)
chr4 (16-75)||(35159525-35159584)
chr4 (16-75)||(40728834-40728893)
chr4 (16-75)||(45462993-45463052)
chr4 (25-75)||(16024680-16024730)
chr4 (16-73)||(51539419-51539475)
chr4 (16-75)||(38550546-38550605)
chr4 (16-75)||(56462942-56463001)
chr4 (600-654)||(11392300-11392354)
chr4 (9-75)||(52917182-52917247)
chr4 (38-75)||(28310158-28310195)
chr4 (587-640)||(38324924-38324977)
chr4 (25-69)||(56318594-56318638)
chr4 (16-75)||(52416206-52416264)
chr4 (581-621)||(6607481-6607521)
chr4 (579-630)||(2254559-2254610)
chr4 (542-577)||(31012259-31012294)
chr4 (542-577)||(31846782-31846817)
chr4 (16-54)||(2013023-2013061)
chr4 (539-581)||(32139836-32139878)
chr4 (549-578)||(31846923-31846952)
chr4 (544-577)||(32008369-32008402)
chr4 (546-579)||(53261093-53261126)
chr4 (596-641)||(53261102-53261147)
[»] chr1 (43 HSPs)
chr1 (9-75)||(39600521-39600587)
chr1 (9-75)||(22333547-22333613)
chr1 (16-76)||(48963606-48963666)
chr1 (16-75)||(22859476-22859535)
chr1 (16-75)||(38861497-38861556)
chr1 (16-75)||(41899559-41899618)
chr1 (9-75)||(12523416-12523482)
chr1 (581-651)||(28739399-28739469)
chr1 (9-75)||(30233555-30233621)
chr1 (16-73)||(12699827-12699884)
chr1 (581-641)||(50754736-50754796)
chr1 (16-75)||(3516866-3516925)
chr1 (16-75)||(29962202-29962261)
chr1 (16-75)||(33802136-33802195)
chr1 (16-75)||(41087222-41087281)
chr1 (16-75)||(41091990-41092049)
chr1 (16-75)||(44754680-44754739)
chr1 (9-75)||(7197717-7197783)
chr1 (9-75)||(29946034-29946100)
chr1 (581-630)||(9379841-9379890)
chr1 (581-656)||(28045316-28045390)
chr1 (16-75)||(41724284-41724343)
chr1 (16-75)||(49852532-49852591)
chr1 (16-75)||(50261269-50261328)
chr1 (9-75)||(10310244-10310310)
chr1 (581-621)||(15928160-15928200)
chr1 (16-75)||(12529180-12529239)
chr1 (541-579)||(10449446-10449484)
chr1 (16-74)||(14586610-14586668)
chr1 (581-630)||(9884864-9884913)
chr1 (541-578)||(28045450-28045487)
chr1 (542-578)||(50754855-50754891)
chr1 (581-630)||(6539645-6539694)
chr1 (10-75)||(43253455-43253520)
chr1 (542-578)||(9379949-9379985)
chr1 (542-577)||(15928073-15928108)
chr1 (539-578)||(28739301-28739340)
chr1 (25-75)||(27217614-27217664)
chr1 (541-571)||(34026751-34026781)
chr1 (549-578)||(28739436-28739465)
chr1 (541-578)||(44381907-44381944)
chr1 (600-641)||(44801764-44801805)
chr1 (542-579)||(44938794-44938831)
[»] scaffold0168 (1 HSPs)
scaffold0168 (9-75)||(17783-17849)
[»] scaffold0343 (1 HSPs)
scaffold0343 (542-582)||(12226-12266)
[»] scaffold0121 (1 HSPs)
scaffold0121 (16-75)||(46703-46762)
[»] scaffold1315 (1 HSPs)
scaffold1315 (549-580)||(1819-1850)
[»] scaffold1293 (1 HSPs)
scaffold1293 (549-580)||(221-252)
[»] scaffold0064 (1 HSPs)
scaffold0064 (35-73)||(61085-61123)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 75 - 318
Target Start/End: Complemental strand, 32520692 - 32520449
Alignment:
Q  75 tgcccttttcattcttttttctcccagcagtaagtgcacaacacaaacataagcgagcgcttttcattcttattaaatttaggctaagtcatatattgtg 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32520692 tgcccttttcattcttttttctcccagcagtaagtgcacaacacaaacataagcgggcgcttttcattcttattaaatttaggctaagtcatatattgtg 32520593  T
Q  175 aattgcttggcatgtgtaatcatttatctcatggatgaacacattttcaagtttaaaaactaagtcattaaaacttaaacatctgatatcatagtgagtg 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||    
T  32520592 aattgcttggcatgtgtaatcatttatctcatggatgaacacattttcaagtttaaaaactaagtcattaaaacttaaacatctgatatcagagcaagtg 32520493  T
Q  275 tgaaacaagttttcaagttctcctatggcaagacactttctgct 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  32520492 tgaaacaagttttcaaattctcctatggcaagacactttctgct 32520449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 310 - 541
Target Start/End: Complemental strand, 32520285 - 32520051
Alignment:
Q  310 ctttctgcttatagtgtttctactttctttgactcatttcattgttcatgcgcagaacaagaaatcaggtttggtggtctcatctcataacatattattc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32520285 ctttctgcttatagtgtttctactttctttgactcatttcattgttcatgctcagaacaagcaatcaggtttggtggtctcatctcataacatattattc 32520186  T
Q  410 tgcatataagactgaattatgcgcttagaacccatttgtacgttttatttaattattt---taaaaaattgtgtcccatcaatattgtgagtccagattt 506  Q
    ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||    |||||||||||||||||||||||||||||| ||||| |    
T  32520185 tgcatataagactgatttatgtgcttagaacccatttgtaagttttatttaattatttgaaaaaaaaattgtgtcccatcaatattgtgagttcagatct 32520086  T
Q  507 gcccatgattgtatcctatcaaatatcttgacttg 541  Q
    ||||||| |||||||||||||||||||||||||||    
T  32520085 gcccatggttgtatcctatcaaatatcttgacttg 32520051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 659 - 844
Target Start/End: Complemental strand, 32520055 - 32519870
Alignment:
Q  659 acttgatagtccatggccgagttgccaaaacaaatccagttaatgggatatgtgtcgaaaagaatttctcatcaacttgaacttgtactttaagtgatgt 758  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32520055 acttgatagtccatggccaagttgccaaaacaaatccagttaatgggatatgtgtcgaaaagaatttctcatcaacttgaacttgtactttaagtgatgt 32519956  T
Q  759 cttgtcttgcatcttattatcgtccttttaatgttcatttttctgttctctcttaatcagaacaataatacacctgtaaaagaaat 844  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32519955 cttgtcttgcatcttattattgtccttttaatgttcatttttctgttctctcttaatcagaacagtaatacacctgtaaaagaaat 32519870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 29330074 - 29330008
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29330074 ttaagagtagaaatatatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 29330008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 38247475 - 38247409
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38247475 ttaagagtagaaatagatttatgatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 38247409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 581 - 651
Target Start/End: Complemental strand, 7211932 - 7211862
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgcta 651  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||    
T  7211932 gaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgcta 7211862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 7253048 - 7252982
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7253048 ttaagagtataaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 7252982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 581 - 651
Target Start/End: Complemental strand, 17272771 - 17272701
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgcta 651  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||    
T  17272771 gaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgcta 17272701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 34847155 - 34847096
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  34847155 tagaaataaatttaggatcttatgtaataaccttaaaaagcttgaaaattattgtaatgt 34847096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 36311430 - 36311371
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36311430 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 36311371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 44866844 - 44866903
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44866844 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 44866903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 114085 - 114151
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||  ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  114085 ttaagagtagaaattgatttaggatcttatataataagcttaaaaagcttgaaaattattgtaatgt 114151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 35582802 - 35582736
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||    
T  35582802 ttaagagtagaaatagatttagtatcttatgtaataaacttaaaaagcttgaaaattattgtaatgt 35582736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 41793489 - 41793555
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  41793489 ttaagagtagaaatagatttatgatcttatgtaataaacttaaaaagcttgaaaattattgtaatgt 41793555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 43745039 - 43744973
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  43745039 ttaagagtagaaatagatttaggatcttatgtaataatcttaaaaagcttaaaaattattgtaatgt 43744973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 35795257 - 35795321
Alignment:
Q  11 aagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  35795257 aagattagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaatttttgtaatgt 35795321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 46255662 - 46255721
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  46255662 tagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 46255721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 26794122 - 26794188
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||| || |||||||||||| || |||||||||||||||||||||||||    
T  26794122 ttaagagtagaaatagatttagcatcttatgtaataagattcaaaagcttgaaaattattgtaatgt 26794188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 32523984 - 32523918
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||| |||| |||| ||||||||||||||| ||||||||||||||||||||    
T  32523984 ttaagagtagaaatagatttgggatcttatataataagcttaaaaaacttgaaaattattgtaatgt 32523918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 38001027 - 38001090
Alignment:
Q  10 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  38001027 taagagtagaaatagatttaggatcttatgtaataagcttaaaaagctt--aaattattgtaatgt 38001090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 14815977 - 14815928
Alignment:
Q  26 tttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14815977 tttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 14815928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 15030378 - 15030317
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgt 70  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||    
T  15030378 ttaagagtagaaatagatttagcatcttatgtaataagcttaaaaaggttgaaaattattgt 15030317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 15262972 - 15262923
Alignment:
Q  26 tttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15262972 tttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 15262923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 33951740 - 33951800
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagctt-aaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  33951740 tagaaatagatttaggatcttatgtaataagcttaaaaaagcttgaaaattattgtaatgt 33951800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 43458950 - 43459009
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  43458950 tagaaatagatttaggatcttatgtagtaagtttaaaaagcttgaaaattattgtaatgt 43459009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 25528440 - 25528381
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||| ||||| |||||||||||| |||||||| |||||||||||||||||||    
T  25528440 tagaaatagattgaggatcttatgtaataagtttaaaaagtttgaaaattattgtaatgt 25528381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 581 - 651
Target Start/End: Original strand, 25099335 - 25099405
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgcta 651  Q
    |||||||||||||| ||| |||||||||||||||| ||||  ||| ||| |||||| ||||||||||||||    
T  25099335 gaaaaagaagaaagacacttgtgacattgtggttgaccaaagtcaccaaccacaatttcactcaagtgcta 25099405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 581 - 621
Target Start/End: Original strand, 7211984 - 7212024
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaat 621  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  7211984 gaaaaagaagaaagtcacatgtgacattgtggttggccaat 7212024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 542 - 578
Target Start/End: Complemental strand, 29681940 - 29681904
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattg 578  Q
    |||||||||||||||||||||||||||||||||||||    
T  29681940 ggataatacttgggtgacattgtggttggtgacattg 29681904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 600 - 652
Target Start/End: Complemental strand, 32315760 - 32315708
Alignment:
Q  600 tgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgctat 652  Q
    |||||||||||||||||||||| ||| ||| ||||||||||| ||||||||||    
T  32315760 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacgcaagtgctat 32315708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 8166531 - 8166590
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||| | |||||||||||||||||||| ||| || |||||||||||||    
T  8166531 tagaaatagatttaggttcttatgtaataagcttaaaaaacttcaacattattgtaatgt 8166590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 582 - 641
Target Start/End: Complemental strand, 29681836 - 29681777
Alignment:
Q  582 aaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcac 641  Q
    ||||| || ||||||||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  29681836 aaaaaaaaaaaagccacatgtgacgttgtggttggccaatgtcaccaaccacaatgtcac 29681777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 544 - 578
Target Start/End: Complemental strand, 17272864 - 17272830
Alignment:
Q  544 ataatacttgggtgacattgtggttggtgacattg 578  Q
    |||||||||||||||||||||||||||||||||||    
T  17272864 ataatacttgggtgacattgtggttggtgacattg 17272830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 26525537 - 26525614
Alignment:
Q  76 gcccttttcattcttttttctcccagcagtaagtgcacaacacaaacataagcgagcgcttttcattcttattaaatttag 156  Q
    |||||||||||| || |||||| |||||   || ||||| ||||||||||||| ||| ||||||||| |||||||||||||    
T  26525537 gcccttttcattgttctttctctcagca---agggcacaccacaaacataagcaagcacttttcatttttattaaatttag 26525614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 24686540 - 24686475
Alignment:
Q  10 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| ||||||||  |||||| | |||||||| ||||||||||||||| || |||||||||||||    
T  24686540 taagattagaaatagttttaggttcttatgtaaaaagcttaaaaagcttcaacattattgtaatgt 24686475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 27215417 - 27215462
Alignment:
Q  111 cacaacacaaacataagcgagcgcttttcattcttattaaatttag 156  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||||    
T  27215417 cacaacacaaacagaagcaagcacttttcattcttattaaatttag 27215462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 838 - 874
Target Start/End: Complemental strand, 32518420 - 32518384
Alignment:
Q  838 aagaaataaatggaagtgacaatatccattagtagta 874  Q
    ||||||| |||||||||||||||||||||||||||||    
T  32518420 aagaaattaatggaagtgacaatatccattagtagta 32518384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 595 - 651
Target Start/End: Complemental strand, 46282926 - 46282870
Alignment:
Q  595 ccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgcta 651  Q
    |||| ||||| |||||||||||||||| ||| |||  ||||||||||||||||||||    
T  46282926 ccacttgtgatattgtggttggccaatgtcaccaactacaatgtcactcaagtgcta 46282870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 578
Target Start/End: Original strand, 7211866 - 7211895
Alignment:
Q  549 acttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||    
T  7211866 acttgggtgacattgtggttggtgacattg 7211895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 578
Target Start/End: Original strand, 17272705 - 17272734
Alignment:
Q  549 acttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||    
T  17272705 acttgggtgacattgtggttggtgacattg 17272734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 112 - 467
Target Start/End: Complemental strand, 30710984 - 30710632
Alignment:
Q  112 acaacacaaacataagcgagcgcttttcattcttattaaatttaggctaagtcatatattgtgaattgcttggcatgtgtaatcatttatctcatggatg 211  Q
    |||||||||||| |||| | | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  30710984 acaacacaaacaaaagcaaacacttttcattcttattaaatttaggctaagtcatatattgtgaatggcttggcatgtgtaatcatctatatcatggatg 30710885  T
Q  212 aacacattttcaagtttaaaaactaagtcattaaaacttaaacatctgatatcatagtgagtgtgaaacaagttttcaagttctcctatggcaagacact 311  Q
    ||||  |||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  30710884 aacaagttttcaagtttaaaaactaagttattaaaacataaacatctgatatcatattgagtgtgaaacaagttttcaagttctcctatggcaagacatt 30710785  T
Q  312 ttctgcttatagtgtttctactttctttgactcatttcattgttcatgcgcagaacaagaaatcaggtttggtggtctcatctcataacatattattctg 411  Q
    ||||||||||||||||| ||||||   || ||| |||||| |||||||| ||||||    |||||||||||||  |||||||||||| ||||||||| ||    
T  30710784 ttctgcttatagtgtttttactttgactg-ctcctttcatagttcatgctcagaac--ccaatcaggtttggtaatctcatctcatagcatattattatg 30710688  T
Q  412 catataagactgaattatgcgcttagaacccatttgtacgttttatttaattattt 467  Q
    || ||||||||   | ||| |||||||||  |||||||||||||||||||||||||    
T  30710687 cagataagactatttcatgtgcttagaacttatttgtacgttttatttaattattt 30710632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 76 - 423
Target Start/End: Complemental strand, 14503816 - 14503471
Alignment:
Q  76 gcccttttcattcttttttctcccagcagtaagtgcacaacacaa-acataagcgagcgcttttcattcttattaaatttaggctaagtcatatattgtg 174  Q
    ||||||||||||||| |||||  |||||   || | ||||||||| ||| |||| |||| ||||||||||||||||||||||||| ||||||||||||||    
T  14503816 gcccttttcattcttctttctttcagca---agcgaacaacacaacacagaagcaagcgtttttcattcttattaaatttaggcttagtcatatattgtg 14503720  T
Q  175 aattgcttggcatgtgtaatcatttatctcatggatgaacacattttcaagtttaaaaactaagtcattaaaacttaaacatctgatatcatagtgagtg 274  Q
    ||| ||||||||||||||||||| || ||||||||||||||  |||||||||||||||||||||  |||||||||||||||| |||||||| | ||||||    
T  14503719 aatagcttggcatgtgtaatcatctacctcatggatgaacaagttttcaagtttaaaaactaagctattaaaacttaaacatatgatatcaaattgagtg 14503620  T
Q  275 tgaaacaagttttcaagttctcctatggcaagacactttctgcttatagtgtttctactttctttgactcatttcattgttcatgcgcagaacaagaaat 374  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||  | ||| ||  |||    
T  14503619 tgaaacaagttttcaagttctccgatggcaaggcactttctgcttatagtgtttctactttctttgactcctttcattgttcatgttcggaagaacgaat 14503520  T
Q  375 caggtttggtggtctcatctcataacatattattctgcatataagactg 423  Q
     ||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  14503519 taggtttggtagtctcatctcataacatattactctgcatataggactg 14503471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 18574729 - 18574795
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  18574729 ttaagagtagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 18574795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 18584610 - 18584676
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  18584610 ttaagagtagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 18584676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 11975777 - 11975836
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11975777 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 11975836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 31319325 - 31319384
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  31319325 tagaaataaatttaggatcttatgtaataaccttaaaaagcttgaaaattattgtaatgt 31319384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 31722235 - 31722176
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31722235 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 31722176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 34540763 - 34540704
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34540763 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 34540704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 304565 - 304621
Alignment:
Q  19 aaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  304565 aaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 304621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 16396148 - 16396207
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  16396148 tagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 16396207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 481498 - 481564
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||| ||||| ||||||||| || ||||||||| ||||||||||||||||||||||||||||    
T  481498 ttaagagtataaatagatttaggatcttgtgtaataagattaaaaagcttgaaaattattgtaatgt 481564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 34951210 - 34951276
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||| | ||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  34951210 ttaagagtatagatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 34951276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 581 - 648
Target Start/End: Original strand, 2543829 - 2543896
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtg 648  Q
    |||||| || ||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||||    
T  2543829 gaaaaaaaaaaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtg 2543896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 9304332 - 9304273
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| |||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  9304332 tagaaatagatttaggatcatatgtaataagcttaaaaaacttgaaaattattgtaatgt 9304273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 31272061 - 31272120
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  31272061 tagaaatagatttaggatcttatataataaacttaaaaagcttgaaaattattgtaatgt 31272120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 29437305 - 29437371
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||| ||||| |||||  || |||||||||||||||||||||||||||| ||||||||||||    
T  29437305 ttaagagtaaaaatagatttaacatcttatgtaataagcttaaaaagcttgaaagttattgtaatgt 29437371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 584 - 647
Target Start/End: Original strand, 369508 - 369571
Alignment:
Q  584 aaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagt 647  Q
    ||||||||||| ||| ||||||||||||||||| |||| ||| ||| |||||||||||||||||    
T  369508 aaagaagaaagacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcactcaagt 369571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 439858 - 439917
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||| ||||||||||||| |||||||||| |||||    
T  439858 tagaaatagatttaggatcttatgtaataggcttaaaaagcttaaaaattattgcaatgt 439917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 581 - 651
Target Start/End: Complemental strand, 11448129 - 11448059
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgcta 651  Q
    ||||||||| ||||| |||| | |||||||||||||||||||| | ||| ||||||||||| |||||||||    
T  11448129 gaaaaagaaaaaagctacatataacattgtggttggccaatattaccaaccacaatgtcacccaagtgcta 11448059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 541 - 578
Target Start/End: Original strand, 2543734 - 2543771
Alignment:
Q  541 gggataatacttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2543734 gggataatacttgggtgacattgtggttggtgacattg 2543771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 542 - 578
Target Start/End: Complemental strand, 16193888 - 16193852
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattg 578  Q
    |||||||||||||||||||||||||||||||||||||    
T  16193888 ggataatacttgggtgacattgtggttggtgacattg 16193852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 542 - 579
Target Start/End: Complemental strand, 369578 - 369541
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattga 579  Q
    |||||||||||| |||||||||||||||||||||||||    
T  369578 ggataatacttgagtgacattgtggttggtgacattga 369541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 542 - 582
Target Start/End: Original strand, 5150619 - 5150659
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattgatga 582  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  5150619 ggataatactttggtgacattgtgcttggtgacattgatga 5150659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 542 - 578
Target Start/End: Complemental strand, 11448224 - 11448188
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattg 578  Q
    |||||||||||||||||||||||||||||||| ||||    
T  11448224 ggataatacttgggtgacattgtggttggtgatattg 11448188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 542 - 578
Target Start/End: Original strand, 28581731 - 28581767
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||| |||||||||||||||||||||||    
T  28581731 ggataatacttggctgacattgtggttggtgacattg 28581767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 586 - 641
Target Start/End: Original strand, 2980786 - 2980841
Alignment:
Q  586 agaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcac 641  Q
    ||||||||||||| ||||||||| |||||| ||||| ||| ||| |||||||||||    
T  2980786 agaagaaagccacttgtgacattatggttgaccaatttcaccaaccacaatgtcac 2980841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 17304402 - 17304352
Alignment:
Q  103 agtaagtgcacaacacaaacataagcgagcgcttttcattcttattaaatt 153  Q
    |||||| |||||||||||||| |||| ||  ||||||||||||||||||||    
T  17304402 agtaagcgcacaacacaaacagaagcaagtacttttcattcttattaaatt 17304352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 581 - 654
Target Start/End: Complemental strand, 35049811 - 35049737
Alignment:
Q  581 gaaaaagaagaaa-gccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgctatcc 654  Q
    ||||||||||||| ||||| ||| | ||||||||||| ||| |||| ||| | ||||||||||||| ||||||||    
T  35049811 gaaaaagaagaaaagccacttgtaatattgtggttggtcaacatcaccaaccgcaatgtcactcaaatgctatcc 35049737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 615
Target Start/End: Complemental strand, 178701 - 178672
Alignment:
Q  586 agaagaaagccacatgtgacattgtggttg 615  Q
    ||||||||||||||||||||||||||||||    
T  178701 agaagaaagccacatgtgacattgtggttg 178672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 578
Target Start/End: Complemental strand, 2543895 - 2543866
Alignment:
Q  549 acttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||    
T  2543895 acttgggtgacattgtggttggtgacattg 2543866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 584 - 625
Target Start/End: Complemental strand, 16193799 - 16193758
Alignment:
Q  584 aaagaagaaagccacatgtgacattgtggttggccaatatca 625  Q
    ||||||||||| ||| |||||||||||| |||||||||||||    
T  16193799 aaagaagaaagacacttgtgacattgtgattggccaatatca 16193758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 9e-67; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 9e-67
Query Start/End: Original strand, 112 - 293
Target Start/End: Complemental strand, 8240740 - 8240559
Alignment:
Q  112 acaacacaaacataagcgagcgcttttcattcttattaaatttaggctaagtcatatattgtgaattgcttggcatgtgtaatcatttatctcatggatg 211  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  8240740 acaacacaaacataagcaagtgcttttcattcctattaaatttaggctaagtcatatattgtgaatggcttggcatgtgtaatcatctatctcatggatg 8240641  T
Q  212 aacacattttcaagtttaaaaactaagtcattaaaacttaaacatctgatatcatagtgagtgtgaaacaagttttcaagtt 293  Q
    || |  |||||||||| |||||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||||||||    
T  8240640 aagaagttttcaagttaaaaaactaagtcattaaaacttaaacatcttatatcagattgagtgtgaaacaaattttcaagtt 8240559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 42191556 - 42191622
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42191556 ttaagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 42191622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 24834972 - 24835038
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  24834972 ttaagagtagaaatagatttaagatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 24835038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 8239319 - 8239260
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8239319 tagaagtagatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 8239260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 28249549 - 28249608
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28249549 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 28249608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 39259634 - 39259575
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39259634 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 39259575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 39317950 - 39317891
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39317950 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 39317891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 43097858 - 43097799
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43097858 tagaaatagatttaggatattatgtaataagcttaaaaagcttgaaaattattgcaatgt 43097799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 6348120 - 6348179
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  6348120 tagaaatagatttaggatcttatataataagcttaaaaagcttgaaaattattgtaatgt 6348179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 11076991 - 11077046
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgta 71  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  11076991 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgta 11077046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 13545586 - 13545527
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  13545586 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattttaatgt 13545527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 13678887 - 13678946
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  13678887 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattttaatgt 13678946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 35683348 - 35683289
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  35683348 tagaaatagatttaggatcttatgtaataagcttaaaaagctttaaaattattgtaatgt 35683289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 40104581 - 40104521
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagctta-aaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  40104581 tagaaatagatttaggatcttatgtaataagcttaaaaaagcttgaaaattattgtaatgt 40104521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 42131253 - 42131197
Alignment:
Q  19 aaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  42131253 aaatatatttaagatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 42131197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 23143459 - 23143400
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| |||||| || |||||||||||||||||||| ||||||||||||||||||||    
T  23143459 tagaaatagatttagaatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 23143400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 31700360 - 31700301
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  31700360 tagaaatagatttaggatcttatgtaataagcttaaaaagcctgaaaattattataatgt 31700301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 225474 - 225533
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||| | |||||||||||||||||||||||| || |||||||||||||    
T  225474 tagaaatagatttaggttcttatgtaataagcttaaaaagcttcaacattattgtaatgt 225533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 701887 - 701946
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||| | |||||||||||||||||||||||| || |||||||||||||    
T  701887 tagaaatagatttaggttcttatgtaataagcttaaaaagcttcaacattattgtaatgt 701946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 739097 - 739156
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||| | |||||||||||||||||||||||| || |||||||||||||    
T  739097 tagaaatagatttaggttcttatgtaataagcttaaaaagcttcaacattattgtaatgt 739156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 862992 - 863051
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||| | |||||||||||||||||||||||| || |||||||||||||    
T  862992 tagaaatagatttaggttcttatgtaataagcttaaaaagcttcaacattattgtaatgt 863051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 20092682 - 20092737
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgta 71  Q
    |||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  20092682 tagaaatagatttaagatcttatgcaataagcttaaaaagcttgaaaattattgta 20092737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 32338636 - 32338695
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||| ||| ||||||||||| ||| |||||||||||||||||||||||||    
T  32338636 tagaaatagatttaagatcttatgtaataaactttaaaagcttgaaaattattgtaatgt 32338695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 37099128 - 37099187
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| | |||||||||| ||||||| ||||||||||||||||||||    
T  37099128 tagaaatagatttaggatctgatgtaataaggttaaaaaacttgaaaattattgtaatgt 37099187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 582 - 621
Target Start/End: Complemental strand, 43465157 - 43465118
Alignment:
Q  582 aaaaagaagaaagccacatgtgacattgtggttggccaat 621  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  43465157 aaaaagaagaaagccacatgtgatattgtggttggccaat 43465118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 542 - 578
Target Start/End: Complemental strand, 1605082 - 1605046
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||| |||||||||||||    
T  1605082 ggataatacttgggtgacattgtagttggtgacattg 1605046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 540 - 584
Target Start/End: Complemental strand, 43465258 - 43465214
Alignment:
Q  540 tgggataatacttgggtgacattgtggttggtgacattgatgaaa 584  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||    
T  43465258 tgggataatacttggatgacattctggttggtgacattggtgaaa 43465214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 38224751 - 38224692
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||  |||||| |||||||||||||| ||||||| ||| || |||||||||||||    
T  38224751 tagaaatagttttaggttattatgtaataagtttaaaaaacttcaacattattgtaatgt 38224692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 540 - 578
Target Start/End: Original strand, 16687510 - 16687548
Alignment:
Q  540 tgggataatacttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  16687510 tgggataatacttggatgacattgtggttggtgatattg 16687548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 596 - 642
Target Start/End: Original strand, 45051339 - 45051385
Alignment:
Q  596 cacatgtgacattgtggttggccaatatcatcaatcacaatgtcact 642  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||||    
T  45051339 cacatgtgacattgtggtcggccaatgtcaccaaccacaatgtcact 45051385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 7e-52; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 258 - 441
Target Start/End: Original strand, 19576584 - 19576770
Alignment:
Q  258 tgatatcatagtgagtgtgaaacaagttttcaagttctcctatggcaagacactttctgcttatagtgtttctactttctttgac---tcatttcattgt 354  Q
    |||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||   || |||||||||    
T  19576584 tgatatcagattgagtgtgaaacaagttttcaagttctcttatggcaagacactttcagcttatagtgtttctactttgtttgactcttcctttcattgt 19576683  T
Q  355 tcatgcgcagaacaagaaatcaggtttggtggtctcatctcataacatattattctgcatataagactgaattatgcgcttagaacc 441  Q
    |||||| ||||||||  ||||||||||| | ||||||||||||||||||||||||| || |||||||||  | ||| ||||||||||    
T  19576684 tcatgctcagaacaaccaatcaggtttgatagtctcatctcataacatattattctacacataagactgtttaatgtgcttagaacc 19576770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 1709045 - 1708979
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  1709045 ttaagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 1708979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 22192623 - 22192689
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||    
T  22192623 ttaagagtagaaataaatttaggatcttatgtaataagcttagatagcttgaaaattattgtaatgt 22192689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 5336528 - 5336464
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 73  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||    
T  5336528 ttaagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaat 5336464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 8198187 - 8198246
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8198187 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 8198246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 8735500 - 8735559
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8735500 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 8735559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 12785968 - 12786027
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12785968 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 12786027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 16512922 - 16512863
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16512922 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 16512863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 25976468 - 25976409
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25976468 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 25976409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 8298587 - 8298526
Alignment:
Q  11 aagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaa 72  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8298587 aagattagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaa 8298526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 38678795 - 38678738
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 73  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38678795 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaat 38678738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 24853646 - 24853582
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 73  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||    
T  24853646 ttaagagtagaaatagatttaggatctcatgtaataagcttaaaaagcttgaaaattaatgtaat 24853582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 3557428 - 3557487
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  3557428 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattataatgt 3557487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 12724485 - 12724544
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  12724485 tagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 12724544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 18809776 - 18809835
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  18809776 tagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 18809835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 26279861 - 26279920
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  26279861 tagaaatagatttaggatcttatgtaatacgcttaaaaagcttgaaaattattgtaatgt 26279920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 37884225 - 37884284
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  37884225 tagaaatagatttaggatcttacgtaataagcttaaaaagcttgaaaattattgtaatgt 37884284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 6430913 - 6430847
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||  || |||||||||||||||||||| ||||||||||||||||||||    
T  6430913 ttaagagtagaaatagatttaacatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 6430847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 581 - 651
Target Start/End: Original strand, 9177931 - 9178001
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgcta 651  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||  |||||||||    
T  9177931 gaaaaagaagaaagtcacatgtgatattgtggttggccaatatcaccaaccacaatgtcatccaagtgcta 9178001  T

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Target: chr5; HSP #20
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 1840043 - 1839994
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaat 630  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1840043 gaaaaagaagaaagccacatgtgacattgtggttggccaatgtcatcaat 1839994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 37029629 - 37029572
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 73  Q
    |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  37029629 tagaaatagattaaggatcttatgtaataagcttaaaaagcttgaaaattattgtaat 37029572  T

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Target: chr5; HSP #22
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 20336824 - 20336765
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||||    
T  20336824 tagaattaaatttagtatcttatgtaataggcttaaaaagcttgaaaattattgtaatgt 20336765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 27115109 - 27115168
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  27115109 tagaaatagatttatgatcttatgtaataagtttaaaaagcttgaaaattattgtaatgt 27115168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 581 - 630
Target Start/End: Original strand, 29385371 - 29385420
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaat 630  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  29385371 gaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaat 29385420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 11719272 - 11719216
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaa 72  Q
    |||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||||    
T  11719272 tagaaatatatttaagatcttatgtaataagtttaaaaagcttgaaaattattgtaa 11719216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 17504433 - 17504492
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||| ||| |||| ||||||| ||||||||||||||||||||||||||||    
T  17504433 tagaaatagatttatgatcttatataataagtttaaaaagcttgaaaattattgtaatgt 17504492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 591 - 648
Target Start/End: Original strand, 5215666 - 5215723
Alignment:
Q  591 aaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtg 648  Q
    |||||||||||||| |||||||||| ||||| ||||||| ||||||||||| ||||||    
T  5215666 aaagccacatgtgatattgtggttgaccaatgtcatcaaccacaatgtcacccaagtg 5215723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 653
Target Start/End: Original strand, 25879406 - 25879463
Alignment:
Q  596 cacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgctatc 653  Q
    |||||||||||||||||||||| ||||||| ||| ||||||||||  ||| |||||||    
T  25879406 cacatgtgacattgtggttggctaatatcaccaaccacaatgtcatccaaatgctatc 25879463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 27950877 - 27950934
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 73  Q
    ||||||||  |||||| | |||||||||||||||||||||||| || |||||||||||    
T  27950877 tagaaatagttttaggttcttatgtaataagcttaaaaagcttcaacattattgtaat 27950934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 542 - 578
Target Start/End: Original strand, 5215560 - 5215596
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattg 578  Q
    |||||||||||||||||||||||||||||| ||||||    
T  5215560 ggataatacttgggtgacattgtggttggtaacattg 5215596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 581 - 641
Target Start/End: Original strand, 23219368 - 23219428
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcac 641  Q
    |||||||||||||| || || |||||||||||||||||||  ||| ||| |||||||||||    
T  23219368 gaaaaagaagaaagtcatatatgacattgtggttggccaaggtcaccaaccacaatgtcac 23219428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 551 - 582
Target Start/End: Original strand, 1839970 - 1840001
Alignment:
Q  551 ttgggtgacattgtggttggtgacattgatga 582  Q
    ||||||||||||||||||||||||||||||||    
T  1839970 ttgggtgacattgtggttggtgacattgatga 1840001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 584 - 654
Target Start/End: Complemental strand, 896338 - 896268
Alignment:
Q  584 aaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgctatcc 654  Q
    |||||||||| || | ||||||||||||||||  |||||||| ||| |||||| |||| |||||| |||||    
T  896338 aaagaagaaaaccgcctgtgacattgtggttgatcaatatcaccaaccacaatctcacccaagtgttatcc 896268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 31469941 - 31469903
Alignment:
Q  37 atgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||||||||||||||||| || |||||||||||||    
T  31469941 atgtaataagcttaaaaagcttcaacattattgtaatgt 31469903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 37013579 - 37013621
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagctt 58  Q
    |||||||| ||||||||| |||||||||||||||| |||||||    
T  37013579 tagaaatagatttaggatcttatgtaataagcttataaagctt 37013621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 584 - 638
Target Start/End: Original strand, 42772054 - 42772108
Alignment:
Q  584 aaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgt 638  Q
    ||||||||||| ||| ||||||||||||||||| |||| ||| ||| ||||||||    
T  42772054 aaagaagaaagacacttgtgacattgtggttggtcaatgtcaccaaccacaatgt 42772108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 541 - 578
Target Start/End: Complemental strand, 12605715 - 12605678
Alignment:
Q  541 gggataatacttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  12605715 gggataatacttaagtgacattgtggttggtgacattg 12605678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 578
Target Start/End: Original strand, 19417442 - 19417471
Alignment:
Q  549 acttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||    
T  19417442 acttgggtgacattgtggttggtgacattg 19417471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 578
Target Start/End: Complemental strand, 29385446 - 29385417
Alignment:
Q  549 acttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||    
T  29385446 acttgggtgacattgtggttggtgacattg 29385417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 2e-49; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 125 - 417
Target Start/End: Original strand, 53226199 - 53226486
Alignment:
Q  125 aagcgagcgcttttcattcttattaaatttaggctaagtcatatattgtgaattgcttggcatgtgtaatcatttatctcatggatgaacacattttcaa 224  Q
    |||| ||| |||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||| | |||||||||||||||||  |||||||    
T  53226199 aagcaagcacttttcattcttattaaatttaggctaagtaatatattgtgaatggtttgacatgtgtaatcgtctatctcatggatgaacaagttttcaa 53226298  T
Q  225 gtttaaaaactaagtcattaaaacttaaacatctgatatcatagtgagtgtgaaacaagttttcaagttctcctatggcaagacactttctgcttatagt 324  Q
     |||||||||||| ||||||||| ||||| |||           ||||| |||||||||||||||||||||| | |||||||||||||||| |||||| |    
T  53226299 atttaaaaactaaatcattaaaatttaaatatc-----------tgagtttgaaacaagttttcaagttctcatgtggcaagacactttctccttataat 53226387  T
Q  325 gtttctactttctttgactc---atttcattgttcatgcgcagaaca---agaaatcaggtttggtggtctcatctcataacatattattctgcatata 417  Q
     ||| |||||||||||||||   || ||||||||||||   ||||||   |  |||||| |||| |  |||||||||| ||| ||||||||||||||||    
T  53226388 atttttactttctttgactcataatctcattgttcatgtttagaacaaccaccaatcagatttgataatctcatctcacaacttattattctgcatata 53226486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 581 - 657
Target Start/End: Complemental strand, 11512459 - 11512383
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgctatccctt 657  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||| |||||    
T  11512459 gaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgctacccctt 11512383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 9128437 - 9128499
Alignment:
Q  10 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaa 72  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9128437 taagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaa 9128499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 9136544 - 9136606
Alignment:
Q  10 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaa 72  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9136544 taagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaa 9136606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 48065719 - 48065785
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  48065719 ttaagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 48065785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 49325054 - 49324988
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  49325054 ttaagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 49324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 16479005 - 16479070
Alignment:
Q  10 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  16479005 taagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 16479070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 21448391 - 21448327
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 73  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  21448391 ttaagagtagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaat 21448327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 41972506 - 41972442
Alignment:
Q  8 attaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaa 72  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  41972506 attaagagtagaaataaatttaggattttatgtaataagcttaaaaaatttgaaaattattgtaa 41972442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 39353913 - 39353972
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39353913 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 39353972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 47013094 - 47013035
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47013094 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 47013035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 47647722 - 47647781
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47647722 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 47647781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 49165435 - 49165376
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49165435 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 49165376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 8484175 - 8484110
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  8484175 ttaagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttg-aaattattgtaatgt 8484110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 30390501 - 30390567
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  30390501 ttaagagtaaaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 30390567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 44205194 - 44205128
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  44205194 ttaagagtataaatagatttaggatcttatgtaataagtttaaaaagcttgaaaattattgtaatgt 44205128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 47372512 - 47372446
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||    
T  47372512 ttaagagtagaaatagatttagcatctcatgtaataagcttaaaaagcttgaaaattattgtaatgt 47372446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 53816743 - 53816799
Alignment:
Q  19 aaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53816743 aaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 53816799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 228183 - 228242
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  228183 tagaaatagatttaggatcttatgtaataagtttaaaaagcttgaaaattattgtaatgt 228242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 3939211 - 3939145
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||| || |||||||||| ||||||||||||| ||||||||||||||||    
T  3939211 ttaagagtagaaatagatttagcatcttatgtaataggcttaaaaagcttaaaaattattgtaatgt 3939145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 20286976 - 20286927
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaat 630  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20286976 gaaaaagaagaaagccacatgtgacattgtggttggccaatgtcatcaat 20286927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 581 - 654
Target Start/End: Complemental strand, 31342079 - 31342006
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgctatcc 654  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||  ||| ||||||||    
T  31342079 gaaaaagaagaaagctacatgtgacattgtggttggccaatgtcaccaaccacaatgtcatccaaatgctatcc 31342006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 41193092 - 41193033
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  41193092 tagaaatagatttaggatcttacgtaataagcttaagaagcttgaaaattattgtaatgt 41193033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 581 - 651
Target Start/End: Original strand, 22893985 - 22894055
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgcta 651  Q
    |||||||||||||| ||| ||||||||||||||||| |||| ||| ||| ||||||||||| |||||||||    
T  22893985 gaaaaagaagaaagtcacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagtgcta 22894055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 36402154 - 36402096
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatg 74  Q
    |||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||    
T  36402154 tagaaatagatttaagatcttatttaataagcttaaaaagcttgaaaattattgtaatg 36402096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 39587376 - 39587426
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaatta 66  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  39587376 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaatta 39587426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 26501530 - 26501472
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  26501530 tagaaatagatttaggatcttatataataagcttaaaaag-ttgaaaattattgtaatgt 26501472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 6937231 - 6937286
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 73  Q
    |||||||| ||||||||| ||||||||  |||||||||||||||||||||||||||||    
T  6937231 tagaaatagatttaggatcttatgtaa--agcttaaaaagcttgaaaattattgtaat 6937286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 541 - 578
Target Start/End: Original strand, 22893890 - 22893927
Alignment:
Q  541 gggataatacttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22893890 gggataatacttgggtgacattgtggttggtgacattg 22893927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 31764525 - 31764469
Alignment:
Q  19 aaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||| | |||| ||||||||||||||||||| || |||||||||||||    
T  31764525 aaataaatttaggttcttatataataagcttaaaaagcttcaacattattgtaatgt 31764469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 32530590 - 32530649
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| || ||||| ||| ||||  |||||||||||||||||||||||||||||||||||    
T  32530590 tagaattagatttaagatcttataaaataagcttaaaaagcttgaaaattattgtaatgt 32530649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 541 - 578
Target Start/End: Complemental strand, 11512555 - 11512518
Alignment:
Q  541 gggataatacttgggtgacattgtggttggtgacattg 578  Q
    |||||||||||||||||||||| |||||||||||||||    
T  11512555 gggataatacttgggtgacattatggttggtgacattg 11512518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 542 - 577
Target Start/End: Complemental strand, 31342165 - 31342130
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacatt 577  Q
    |||||||| |||||||||||||||||||||||||||    
T  31342165 ggataatatttgggtgacattgtggttggtgacatt 31342130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 546 - 580
Target Start/End: Complemental strand, 5633213 - 5633179
Alignment:
Q  546 aatacttgggtgacattgtggttggtgacattgat 580  Q
    |||||||||||||||||||||||||||| ||||||    
T  5633213 aatacttgggtgacattgtggttggtgatattgat 5633179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 600 - 630
Target Start/End: Original strand, 7977585 - 7977615
Alignment:
Q  600 tgtgacattgtggttggccaatatcatcaat 630  Q
    |||||||||||||||||||||||||||||||    
T  7977585 tgtgacattgtggttggccaatatcatcaat 7977615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 539 - 577
Target Start/End: Complemental strand, 20287065 - 20287027
Alignment:
Q  539 ttgggataatacttgggtgacattgtggttggtgacatt 577  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  20287065 ttgggaaaatatttgggtgacattgtggttggtgacatt 20287027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 549 - 579
Target Start/End: Complemental strand, 22894051 - 22894021
Alignment:
Q  549 acttgggtgacattgtggttggtgacattga 579  Q
    |||||||||||||||||||||||||||||||    
T  22894051 acttgggtgacattgtggttggtgacattga 22894021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 544 - 582
Target Start/End: Original strand, 41410500 - 41410538
Alignment:
Q  544 ataatacttgggtgacattgtggttggtgacattgatga 582  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  41410500 ataatatttgggtgacattatggttggtgacattgatga 41410538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 540 - 578
Target Start/End: Original strand, 48342784 - 48342822
Alignment:
Q  540 tgggataatacttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  48342784 tgggataatacttgggtgacattatggttggcgacattg 48342822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 578
Target Start/End: Original strand, 11512393 - 11512422
Alignment:
Q  549 acttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||    
T  11512393 acttgggtgacattgtggttggtgacattg 11512422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 582
Target Start/End: Original strand, 20286901 - 20286934
Alignment:
Q  549 acttgggtgacattgtggttggtgacattgatga 582  Q
    |||||||||||||| |||||||||||||||||||    
T  20286901 acttgggtgacattatggttggtgacattgatga 20286934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 541 - 578
Target Start/End: Complemental strand, 36738421 - 36738384
Alignment:
Q  541 gggataatacttgggtgacattgtggttggtgacattg 578  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  36738421 gggaaaatatttgggtgacattgtggttggtgacattg 36738384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 578
Target Start/End: Original strand, 48342214 - 48342243
Alignment:
Q  549 acttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||    
T  48342214 acttgggtgacattgtggttggtgacattg 48342243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 578
Target Start/End: Complemental strand, 49159539 - 49159510
Alignment:
Q  549 acttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||    
T  49159539 acttgggtgacattgtggttggtgacattg 49159510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 5e-25; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 252 - 422
Target Start/End: Original strand, 43162482 - 43162654
Alignment:
Q  252 aacatctgatatcatagtgagtgtgaaacaagttttcaagttctcctatggcaagacactttctgcttatagtgtttctactttctttgac---tcattt 348  Q
    |||||||| ||||| | ||||||||  |||||||||  ||||||||||||||||||||||| || | | |||| |||||||| | ||||||   || |||    
T  43162482 aacatctggtatcagattgagtgtgttacaagtttttgagttctcctatggcaagacacttgctacctgtagtttttctactctatttgactcttccttt 43162581  T
Q  349 cattgttcatgcgcagaacaagaaatcaggtttggtggtctcatctcataacatattattctgcatataagact 422  Q
    |||||||||||| ||||||||  ||||||||||| | |||||||||   ||||||||||||||| |||||||||    
T  43162582 cattgttcatgctcagaacaaccaatcaggtttgttagtctcatcttgcaacatattattctgc-tataagact 43162654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 5462133 - 5462067
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5462133 ttaagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 5462067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 1209247 - 1209188
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1209247 tagaaatatatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 1209188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 6404920 - 6404979
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6404920 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 6404979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 582 - 657
Target Start/End: Complemental strand, 15562275 - 15562200
Alignment:
Q  582 aaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgctatccctt 657  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||| |||||    
T  15562275 aaaaagaagaaagtcacatgtgacattgtggttggccaatgtcatcaaccacaatgtcacccaaatgctacccctt 15562200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 45235031 - 45235090
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45235031 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 45235090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 43334469 - 43334535
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  43334469 ttaagagtagaaatagatttagcatcttatgtaataagtttaaaaagcttgaaaattattgtaatgt 43334535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 13279481 - 13279540
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  13279481 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattaatgtaatgt 13279540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 17137034 - 17136975
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  17137034 tagaaatagatttaggaacttatgtaataagcttaaaaagcttgaaaattattgtaatgt 17136975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 31993410 - 31993351
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  31993410 tagaaatagatttaggatcttatgtaataagcttaaaaatcttgaaaattattgtaatgt 31993351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 45117814 - 45117873
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  45117814 tagaaatagatttaagatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 45117873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 581 - 651
Target Start/End: Complemental strand, 7755408 - 7755338
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgcta 651  Q
    ||||||||| |||||||| |||||||||||||||||||||| ||| ||| ||||||||||| |||||||||    
T  7755408 gaaaaagaaaaaagccacttgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgcta 7755338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 15111064 - 15111007
Alignment:
Q  18 gaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  15111064 gaaatagatttagaatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 15111007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 15912516 - 15912575
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  15912516 tagaaatagatttaggatcttatggaataaacttaaaaagcttgaaaattattgtaatgt 15912575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 38209137 - 38209196
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  38209137 tagaaatagatttaggatcttatgtaataagcttaaaagacttgaaaattattgtaatgt 38209196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 44760839 - 44760898
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  44760839 tagaaatagatttaggatcttatgtaataagcttgaaaaggttgaaaattattgtaatgt 44760898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 39819135 - 39819086
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaat 630  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  39819135 gaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaat 39819086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 1115909 - 1115968
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||||| ||||| ||||||    
T  1115909 tagaaatagatttaggatcttatgtaataagcctaaaaagcttgaaagttattataatgt 1115968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 5935590 - 5935531
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||| |||||| | |||||||||||||||||||||||| || |||||||||||||    
T  5935590 tagaaataattttaggttcttatgtaataagcttaaaaagcttcaacattattgtaatgt 5935531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 30490100 - 30490042
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||||||    
T  30490100 tagaaatagatttaggatcttatgtaataa-cttaaaaagcttgaaaattatagtaatgt 30490042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 38702939 - 38702880
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||| |||||||| ||||||| |||||||||||||||||||    
T  38702939 tagaaatagatttaggatcttatataataagcctaaaaagtttgaaaattattgtaatgt 38702880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 7940866 - 7940816
Alignment:
Q  25 atttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  7940866 atttaggatcttatataataagcttaaaaagtttgaaaattattgtaatgt 7940816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 395
Target Start/End: Original strand, 43172247 - 43172390
Alignment:
Q  252 aacatctgatatcatagtgagtgtgaaacaagttttcaagttctcctatggcaagacactttctgcttatagtgtttctactttctttgactcat---tt 348  Q
    |||||||  ||||| | |||||||| ||||||||||||||    | |||| || ||||||| || | |||||||||||||||||||||  ||| |   ||    
T  43172247 aacatcttgtatcagattgagtgtgtaacaagttttcaaga---catatgacaggacacttgctacgtatagtgtttctactttctttcgctcttccttt 43172343  T
Q  349 cattgttcatgcgcagaacaagaaatcaggtttggtggtctcatctc 395  Q
     ||||||||||| ||||||||  ||||||||||||| ||||||||||    
T  43172344 tattgttcatgcccagaacaaccaatcaggtttggtagtctcatctc 43172390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 12918605 - 12918556
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaat 630  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||| ||||    
T  12918605 gaaaaagaaaaaagccacatgtgacattgtggttggccaatgtcaccaat 12918556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 542 - 578
Target Start/End: Complemental strand, 12918700 - 12918664
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattg 578  Q
    |||||||||||||||||||||||||||||||||||||    
T  12918700 ggataatacttgggtgacattgtggttggtgacattg 12918664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 542 - 578
Target Start/End: Complemental strand, 39819230 - 39819194
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattg 578  Q
    |||||||||||||||||||||||||||||||||||||    
T  39819230 ggataatacttgggtgacattgtggttggtgacattg 39819194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 540 - 577
Target Start/End: Complemental strand, 7755496 - 7755459
Alignment:
Q  540 tgggataatacttgggtgacattgtggttggtgacatt 577  Q
    |||||||||| |||||||||||||||||||||||||||    
T  7755496 tgggataatatttgggtgacattgtggttggtgacatt 7755459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 34950842 - 34950891
Alignment:
Q  26 tttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||| | |||||||||||||||||||||||| || |||||||||||||    
T  34950842 tttaggttcttatgtaataagcttaaaaagctttaacattattgtaatgt 34950891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 16415296 - 16415336
Alignment:
Q  35 ttatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  16415296 ttatgtaataagcttaaaaagcttcaacattattgtaatgt 16415336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 540 - 578
Target Start/End: Original strand, 5913513 - 5913551
Alignment:
Q  540 tgggataatacttgggtgacattgtggttggtgacattg 578  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  5913513 tggggtaacacttgggtgacattgtggttggtgacattg 5913551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 581 - 647
Target Start/End: Original strand, 13421775 - 13421841
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagt 647  Q
    |||||| ||||||| ||||||| || |||||||||| |||| ||| ||| ||||||||||| |||||    
T  13421775 gaaaaaaaagaaagtcacatgtaacgttgtggttggtcaatgtcaccaaccacaatgtcacccaagt 13421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 549 - 579
Target Start/End: Complemental strand, 13421841 - 13421811
Alignment:
Q  549 acttgggtgacattgtggttggtgacattga 579  Q
    |||||||||||||||||||||||||||||||    
T  13421841 acttgggtgacattgtggttggtgacattga 13421811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 578
Target Start/End: Original strand, 7755342 - 7755371
Alignment:
Q  549 acttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||    
T  7755342 acttgggtgacattgtggttggtgacattg 7755371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 542 - 578
Target Start/End: Original strand, 12918498 - 12918535
Alignment:
Q  542 ggataatactt-gggtgacattgtggttggtgacattg 578  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  12918498 ggataatactttgggtgacattgtggttggtgacattg 12918535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 31715233 - 31715168
Alignment:
Q  10 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| ||||||||  |||||| | ||||||||||||||||||||| || |  |||||||||||||    
T  31715233 taagattagaaatagttttaggttcttatgtaataagcttaaaaagtttcatcattattgtaatgt 31715168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 578
Target Start/End: Original strand, 39819060 - 39819089
Alignment:
Q  549 acttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||    
T  39819060 acttgggtgacattgtggttggtgacattg 39819089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 47984270 - 47984204
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47984270 ttaagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 47984204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 4353389 - 4353454
Alignment:
Q  10 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4353389 taagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 4353454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 38988437 - 38988371
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  38988437 ttaagagtagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 38988371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 45657262 - 45657197
Alignment:
Q  10 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45657262 taagattagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 45657197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 53271650 - 53271715
Alignment:
Q  10 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53271650 taagattagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 53271715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 55609863 - 55609798
Alignment:
Q  10 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  55609863 taagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 55609798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 1603588 - 1603647
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1603588 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 1603647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 4189219 - 4189160
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4189219 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 4189160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 6964257 - 6964316
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6964257 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 6964316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 9035431 - 9035372
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9035431 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 9035372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 31093904 - 31093963
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31093904 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 31093963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 38217616 - 38217557
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38217616 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 38217557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 45229874 - 45229933
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45229874 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 45229933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 49375121 - 49375180
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49375121 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 49375180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 52502213 - 52502272
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52502213 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 52502272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 13753070 - 13753136
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| ||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  13753070 ttaagtgtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 13753136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 53513089 - 53513155
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| ||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  53513089 ttaagggtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 53513155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 5419628 - 5419692
Alignment:
Q  11 aagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  5419628 aagattagaattaaatttaggatcttatgtaataggcttaaaaagcttgaaaattattgtaatgt 5419692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 30004365 - 30004421
Alignment:
Q  19 aaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30004365 aaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 30004421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 167861 - 167806
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgta 71  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  167861 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgta 167806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 4048941 - 4049000
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  4048941 tagaaatatatttaggatcttatgtaataaacttaaaaagcttgaaaattattgtaatgt 4049000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 15542153 - 15542094
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  15542153 tagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 15542094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 28780118 - 28780059
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  28780118 tagaaatagatttaggatcttatgtgataagcttaaaaagcttgaaaattattgtaatgt 28780059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 35319210 - 35319151
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  35319210 tagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 35319151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 40690757 - 40690691
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||| ||||| |||||| || |||||||||||||||||||| ||||||||||||||||||||    
T  40690757 ttaagagtaaaaatagatttagcatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 40690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 47605195 - 47605261
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||| ||||||||||  ||||| || |||||||||||||||||||||||||||||||||||||||||    
T  47605195 ttaatagtagaaatagttttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 47605261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 51889967 - 51890033
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||| ||| |||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  51889967 ttaatagtggaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 51890033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 581 - 630
Target Start/End: Original strand, 31846877 - 31846926
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaat 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31846877 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcaccaat 31846926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 44109377 - 44109438
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgt 70  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||| |||||||||||||||    
T  44109377 ttaagattagaaatagatttaggatcttatgtaataagcttaaaaaacttgaaaattattgt 44109438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 35159525 - 35159584
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| |||||  || |||||||||||||||||||||||||||||||||||||||||    
T  35159525 tagaaatagatttaacatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 35159584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 40728834 - 40728893
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  40728834 tagaaatagatttaggatcttatgtaataaacttaaaaaacttgaaaattattgtaatgt 40728893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 45462993 - 45463052
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  45462993 tagaaatagatttaggatcttatgtaataagtttaaaaagcttgaaaatgattgtaatgt 45463052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 16024680 - 16024730
Alignment:
Q  25 atttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  16024680 atttaggatcttatgtaataagcataaaaagcttgaaaattattgtaatgt 16024730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 51539419 - 51539475
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 73  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  51539419 tagaaatagatttaggatcttatgtaataagctt-aaaagcttgaaaattattgtaat 51539475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 38550605 - 38550546
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||| ||| ||||||| |||||||||||||||||||||||||| ||||||    
T  38550605 tagaaatagatttaagatcttatgtattaagcttaaaaagcttgaaaattattataatgt 38550546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 56463001 - 56462942
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| || | | ||||||||||||||||||||||||||||||||||    
T  56463001 tagaaatagatttaggatcttgtatcataagcttaaaaagcttgaaaattattgtaatgt 56462942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 600 - 654
Target Start/End: Complemental strand, 11392354 - 11392300
Alignment:
Q  600 tgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgctatcc 654  Q
    |||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||    
T  11392354 tgtgacattgtggtaggccaatttcatcaaccacaatgtcacccaagtgctatcc 11392300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 52917247 - 52917182
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||| |||||||||| ||||||||| ||||| ||||||||| |||||||||||| ||||||||||||    
T  52917247 ttaatagtagaaatagatttaggatcttatgcaataagctt-aaaagcttgaaagttattgtaatgt 52917182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 28310195 - 28310158
Alignment:
Q  38 tgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28310195 tgtaataagcttaaaaagcttgaaaattattgtaatgt 28310158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 587 - 640
Target Start/End: Original strand, 38324924 - 38324977
Alignment:
Q  587 gaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtca 640  Q
    |||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||    
T  38324924 gaagaaagccacatgtgatattatggttggccaatatcaccaaccacaatgtca 38324977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 56318594 - 56318638
Alignment:
Q  25 atttaggatattatgtaataagcttaaaaagcttgaaaattattg 69  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||    
T  56318594 atttaggatcttatgtaataagcttaaaaagtttgaaaattattg 56318638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 52416264 - 52416206
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| |||||| || |||||||||||||||| ||| ||||||||||||||||||||    
T  52416264 tagaaatagatttagaatcttatgtaataagcttacaaa-cttgaaaattattgtaatgt 52416206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 581 - 621
Target Start/End: Original strand, 6607481 - 6607521
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaat 621  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  6607481 gaaaaagaagaaagccacatgtgacattatggttggtcaat 6607521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 579 - 630
Target Start/End: Complemental strand, 2254610 - 2254559
Alignment:
Q  579 atgaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaat 630  Q
    |||||||| || |||| ||||||||||||||||||||| |||| ||||||||    
T  2254610 atgaaaaaaaaaaaagtcacatgtgacattgtggttggtcaatgtcatcaat 2254559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 542 - 577
Target Start/End: Complemental strand, 31012294 - 31012259
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacatt 577  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31012294 ggataatacttaggtgacattgtggttggtgacatt 31012259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 542 - 577
Target Start/End: Original strand, 31846782 - 31846817
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacatt 577  Q
    ||||||||||||||||||||| ||||||||||||||    
T  31846782 ggataatacttgggtgacattatggttggtgacatt 31846817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 2013061 - 2013023
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaa 54  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  2013061 tagaaatagatttaggatcttatgtaataagcttaaaaa 2013023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 539 - 581
Target Start/End: Complemental strand, 32139878 - 32139836
Alignment:
Q  539 ttgggataatacttgggtgacattgtggttggtgacattgatg 581  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||    
T  32139878 ttgggataatatttgggtgacattgtggttgatgaaattgatg 32139836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 578
Target Start/End: Complemental strand, 31846952 - 31846923
Alignment:
Q  549 acttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||    
T  31846952 acttgggtgacattgtggttggtgacattg 31846923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 544 - 577
Target Start/End: Complemental strand, 32008402 - 32008369
Alignment:
Q  544 ataatacttgggtgacattgtggttggtgacatt 577  Q
    |||| |||||||||||||||||||||||||||||    
T  32008402 ataacacttgggtgacattgtggttggtgacatt 32008369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 546 - 579
Target Start/End: Original strand, 53261093 - 53261126
Alignment:
Q  546 aatacttgggtgacattgtggttggtgacattga 579  Q
    ||||||| ||||||||||||||||||||||||||    
T  53261093 aatacttaggtgacattgtggttggtgacattga 53261126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 641
Target Start/End: Complemental strand, 53261147 - 53261102
Alignment:
Q  596 cacatgtgacattgtggttggccaatatcatcaatcacaatgtcac 641  Q
    ||||||||||||||||||||| |||| ||| ||| |||||||||||    
T  53261147 cacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcac 53261102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 2e-24; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 39600521 - 39600587
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39600521 ttaagagtagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 39600587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 22333613 - 22333547
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  22333613 ttaagagtagaaatagatttagcatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 22333547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 48963666 - 48963606
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgtg 76  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48963666 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgtg 48963606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 22859476 - 22859535
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22859476 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 22859535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 38861497 - 38861556
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38861497 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 38861556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 41899618 - 41899559
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41899618 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 41899559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 12523482 - 12523416
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||||    
T  12523482 ttaagagtagaaatagatttaacatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 12523416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 581 - 651
Target Start/End: Original strand, 28739399 - 28739469
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgcta 651  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||    
T  28739399 gaaaaagaaaaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgcta 28739469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 30233555 - 30233621
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| ||||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  30233555 ttaagagtagaaatagatttaggatcttatgtaataagattaaaaaacttgaaaattattgtaatgt 30233621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 12699884 - 12699827
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaat 73  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12699884 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaat 12699827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 581 - 641
Target Start/End: Complemental strand, 50754796 - 50754736
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcac 641  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||    
T  50754796 gaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcac 50754736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 3516925 - 3516866
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  3516925 tagaaatagatttagaatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 3516866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 29962202 - 29962261
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29962202 tagaaataggtttaggatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 29962261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 33802136 - 33802195
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  33802136 tagaaatagatttaggatcttatgtaataagcttaaaaagcttgaaaattatagtaatgt 33802195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 41087222 - 41087281
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  41087222 tagaaatagatttagaatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 41087281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 41091990 - 41092049
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  41091990 tagaaatagatttagaatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 41092049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 44754739 - 44754680
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  44754739 tagaaatagatttatgatcttatgtaataagcttaaaaagcttgaaaattattgtaatgt 44754680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 7197783 - 7197717
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||| || ||||||||||||||||    
T  7197783 ttaagagtagaaatagatttagcatcttatgtaataagcttaaaaagtttaaaaattattgtaatgt 7197717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 29946100 - 29946034
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||| || |||||||||||| ||| ||||||||||||||||||||||||    
T  29946100 ttaagagtagaaatagatttagcatcttatgtaataagtttataaagcttgaaaattattgtaatgt 29946034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 9379890 - 9379841
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaat 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9379890 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcaccaat 9379841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 581 - 656
Target Start/End: Complemental strand, 28045390 - 28045316
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaatcacaatgtcactcaagtgctatccct 656  Q
    |||||||||||||||||| ||||||||| |||||||||||| ||| ||| ||||||||||| ||||||||| ||||    
T  28045390 gaaaaagaagaaagccacttgtgacattatggttggccaat-tcaccaaccacaatgtcacccaagtgctacccct 28045316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 41724284 - 41724343
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  41724284 tagaaatagatttaggatcttatgtaataagtttaaaaatcttgaaaattattgtaatgt 41724343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 49852532 - 49852591
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  49852532 tagaaatagatttaggatcttatgtaataagcttaaagtgcttgaaaattattgtaatgt 49852591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 50261328 - 50261269
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||    
T  50261328 tagaaatagatttatgatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 50261269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 10310310 - 10310244
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||||||||||| |||||| || ||||||||| |||||||||| | ||||||||||||||||||    
T  10310310 ttaagagtagaaatagatttagcatcttatgtaatgagcttaaaaatcatgaaaattattgtaatgt 10310244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 581 - 621
Target Start/End: Original strand, 15928160 - 15928200
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaat 621  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15928160 gaaaaagaagaaagccacatgtgacattgtggttggccaat 15928200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 12529180 - 12529239
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| ||||| ||| |||| ||||||||||| ||||||||||||||||||||||||    
T  12529180 tagaaatagatttaagatcttatataataagcttacaaagcttgaaaattattgtaatgt 12529239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 541 - 579
Target Start/End: Original strand, 10449446 - 10449484
Alignment:
Q  541 gggataatacttgggtgacattgtggttggtgacattga 579  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10449446 gggataatacttgggtgacattgtggttggtgacattga 10449484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 14586668 - 14586610
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatg 74  Q
    |||||||| ||||||||| ||||| |||||| ||||||| |||||||||||||||||||    
T  14586668 tagaaatagatttaggatcttatgcaataagtttaaaaaacttgaaaattattgtaatg 14586610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 9884913 - 9884864
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaat 630  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  9884913 gaaaaagaagaaagccacatgtgacattgtggttgaccaatgtcaccaat 9884864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 541 - 578
Target Start/End: Complemental strand, 28045487 - 28045450
Alignment:
Q  541 gggataatacttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28045487 gggataatacttgggtgacattgtggttggtgacattg 28045450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 542 - 578
Target Start/End: Complemental strand, 50754891 - 50754855
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattg 578  Q
    |||||||||||||||||||||||||||||||||||||    
T  50754891 ggataatacttgggtgacattgtggttggtgacattg 50754855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 581 - 630
Target Start/End: Original strand, 6539645 - 6539694
Alignment:
Q  581 gaaaaagaagaaagccacatgtgacattgtggttggccaatatcatcaat 630  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  6539645 gaaaaagaagaaagtcacatgtgacattgtggttgaccaatgtcaccaat 6539694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 43253455 - 43253520
Alignment:
Q  10 taagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||| ||||||||  |||||| | ||||||||||| |||||||||||| || |||||||||||||    
T  43253455 taagattagaaatagttttaggtttttatgtaataaacttaaaaagcttcaacattattgtaatgt 43253520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 542 - 578
Target Start/End: Complemental strand, 9379985 - 9379949
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattg 578  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9379985 ggataatatttgggtgacattgtggttggtgacattg 9379949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 542 - 577
Target Start/End: Original strand, 15928073 - 15928108
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacatt 577  Q
    |||||||||||||||||||||||| |||||||||||    
T  15928073 ggataatacttgggtgacattgtgattggtgacatt 15928108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 539 - 578
Target Start/End: Original strand, 28739301 - 28739340
Alignment:
Q  539 ttgggataatacttgggtgacattgtggttggtgacattg 578  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  28739301 ttgggataatacttgggtgatattgtggttggtgatattg 28739340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 27217614 - 27217664
Alignment:
Q  25 atttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    ||||||| | |||||||||||||||||||||||| ||  ||||||||||||    
T  27217614 atttaggttcttatgtaataagcttaaaaagcttcaacgttattgtaatgt 27217664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 541 - 571
Target Start/End: Original strand, 34026751 - 34026781
Alignment:
Q  541 gggataatacttgggtgacattgtggttggt 571  Q
    |||||||||||||||||||||||||||||||    
T  34026751 gggataatacttgggtgacattgtggttggt 34026781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 549 - 578
Target Start/End: Complemental strand, 28739465 - 28739436
Alignment:
Q  549 acttgggtgacattgtggttggtgacattg 578  Q
    ||||||||||||||||||||||||||||||    
T  28739465 acttgggtgacattgtggttggtgacattg 28739436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 541 - 578
Target Start/End: Original strand, 44381907 - 44381944
Alignment:
Q  541 gggataatacttgggtgacattgtggttggtgacattg 578  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  44381907 gggataatatttgggtgacattgtggttggtgatattg 44381944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 600 - 641
Target Start/End: Complemental strand, 44801805 - 44801764
Alignment:
Q  600 tgtgacattgtggttggccaatatcatcaatcacaatgtcac 641  Q
    |||||||||||||||||||||| ||||||| |||||| ||||    
T  44801805 tgtgacattgtggttggccaatgtcatcaaccacaatatcac 44801764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 542 - 579
Target Start/End: Original strand, 44938794 - 44938831
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattga 579  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  44938794 ggataacacttgggtgacattgtggttagtgacattga 44938831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 55; Significance: 5e-22; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 17783 - 17849
Alignment:
Q  9 ttaagagtagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  17783 ttaagagtaggaataaatttaggatcttatgtaataagcttaaaaaacttgaaaattattgtaatgt 17849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 542 - 582
Target Start/End: Original strand, 12226 - 12266
Alignment:
Q  542 ggataatacttgggtgacattgtggttggtgacattgatga 582  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  12226 ggataatacttgggtgacattgtagttggtgacattgatga 12266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 46762 - 46703
Alignment:
Q  16 tagaaataaatttaggatattatgtaataagcttaaaaagcttgaaaattattgtaatgt 75  Q
    |||||||| | ||||| | |||||||||||||||||||||||| || |||||||||||||    
T  46762 tagaaatagaattaggttcttatgtaataagcttaaaaagcttcaacattattgtaatgt 46703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 549 - 580
Target Start/End: Original strand, 1819 - 1850
Alignment:
Q  549 acttgggtgacattgtggttggtgacattgat 580  Q
    ||||||||||||||||||||||||||||||||    
T  1819 acttgggtgacattgtggttggtgacattgat 1850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 549 - 580
Target Start/End: Complemental strand, 252 - 221
Alignment:
Q  549 acttgggtgacattgtggttggtgacattgat 580  Q
    ||||||||||||||||||||||||||||||||    
T  252 acttgggtgacattgtggttggtgacattgat 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 61123 - 61085
Alignment:
Q  35 ttatgtaataagcttaaaaagcttgaaaattattgtaat 73  Q
    |||||||||||||||||||||||| || |||||||||||    
T  61123 ttatgtaataagcttaaaaagcttcaacattattgtaat 61085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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