View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709R-Insertion-10 (Length: 282)

Name: NF1709R-Insertion-10
Description: NF1709R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709R-Insertion-10
NF1709R-Insertion-10
[»] chr3 (1 HSPs)
chr3 (9-282)||(32784389-32784662)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 32784662 - 32784389
Alignment:
Q  9 ttcagcgctggcactacttatttgagttaaatagtagttgccacttctaagttctaaccacttaacctttatccttcaatgagaaaccacatgcacaact 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32784662 ttcagcgctggcactacttatttgagttaaatagtagttgccacttctaagttctaaccacttaacctttatccttcaatgagaaaccacatgcacaact 32784563  T
Q  109 tggttttgtatttacttcatataataactcaactgtgcacacgattccaataaaataaccataaatatgtagttaactctaactaaatcacagtgctgac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32784562 tggttttgtatttacttcatataataactcaactgtgcacacgattccaataaaataaccataaatatgtagttaactctaactaaatcacagtgctgac 32784463  T
Q  209 atttttagtactagtacattgatgccatttatatccttttgtatgaggcatcatactgtaggcatgataactgc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  32784462 atttttagtactagtacattgatgccatttatatccttttgtatgatacatcatactgttggcatgataactgc 32784389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University