View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709R-Insertion-13 (Length: 169)
Name: NF1709R-Insertion-13
Description: NF1709R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709R-Insertion-13 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 4e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 4e-64
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 10935495 - 10935655
Alignment:
| Q |
9 |
aaatcttatttcaaaagtttgtacgagaggtacnnnnnnnactccaaaatttgaattttttggggtgtttgacactgttccgattctataattcgtaacg |
108 |
Q |
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| T |
10935495 |
aaatcttatttcaaaagtttgtacgagaggtactttttttactccaaaatttgaattttttggggtgtttgacactgttccgattctatagttcgcaatg |
10935594 |
T |
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| Q |
109 |
actaaaagagttacaaattttataatttaaaatgtagttttacagagattacacaaacagc |
169 |
Q |
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| T |
10935595 |
actaaaagagttacagattttataatttaaaatgtagttttacagagattacacaaacagc |
10935655 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 328514 - 328610
Alignment:
| Q |
71 |
gggtgtttgacactgttccgattctataattcgtaacgactaaaagagttacaaattttataatttaaaatgtagttttacagagattacacaaaca |
167 |
Q |
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| T |
328514 |
gggtgttcgacgcttttcggattctataatctgaaatgactaaaagggtttcagattatacaatctgaaatgtagttttacagagatcacacaaaca |
328610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 36562766 - 36562869
Alignment:
| Q |
64 |
ttttttggggtgtttgacactgttccgattctataattcgtaacgactaaaagagttacaaattttataatttaaaatgtagttttacagagattacaca |
163 |
Q |
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| T |
36562766 |
ttttctgggttgttggacacatttcagattatataatccgaaatgactaaaagggtttcagattataaaatctaaaatttagttttacagagaatacaca |
36562865 |
T |
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| Q |
164 |
aaca |
167 |
Q |
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| T |
36562866 |
aaca |
36562869 |
T |
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