View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709R-Insertion-2 (Length: 1096)
Name: NF1709R-Insertion-2
Description: NF1709R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709R-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 275 - 807
Target Start/End: Complemental strand, 38891480 - 38890955
Alignment:
| Q |
275 |
caactagtgtatgactaatgatcaaactagctttgctattgctattgctattgctattgcttctgaatctgatcc----tgatcctcaaaagcaaagtat |
370 |
Q |
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| T |
38891480 |
caactagtgcatgactaatgatcaaactagctttgctattgctattgctattgctattgcttctgaatctgatccatcctgatcctcaaaagcaaagtat |
38891381 |
T |
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| Q |
371 |
agtatagtagccccatcaagaccttttggtagtacttcacgcctcttgctgtgcaaagaaacttatcagttcgatggatgggattggacatatctatgat |
470 |
Q |
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| T |
38891380 |
agtatagtagccccatcaagagcttttggtagtacttcacgcctcttgctgtgcaaagaaacttatcagttcgatggatgggattggacatatctatgat |
38891281 |
T |
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| Q |
471 |
ctgacaaactgtttctatcattcttatatttttgtgatcaactaggtttatatattgttcttgttaacgaatacttaacatcactctttaaggattctaa |
570 |
Q |
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| T |
38891280 |
ctgacaaactgtttctatcattcttatatttttgtgatcaacttggtttatatattgttcttgttaacga---------atcactctttaaggattctaa |
38891190 |
T |
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| Q |
571 |
gttaagaattgatcattaaaaaagtctaatatttcaatttttaatatatcggatatggtttttat-nnnnnnntttcatttaaagtatttaaataaagaa |
669 |
Q |
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| T |
38891189 |
gttaaaaattgatcattgaaaaagtttaatatttcaatttttaatatattgaatatcgtttttgtaaaaaaaaattcatttaaagtatt----taaagaa |
38891094 |
T |
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| Q |
670 |
tgcatttagtacactcattaacatcctctaccta-tttaatatatcaaaatacaatcttaagccatatcatgttatgtatctctgttttttggtagctat |
768 |
Q |
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| T |
38891093 |
tgcatttagtacactcattaacatcctctacctattttaaaatatcaaaatacaatcttaagccatttcatgttatgtatctctcttttttggtagctat |
38890994 |
T |
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| Q |
769 |
ctctatcttatattttcatatgtttaatttgcagtagca |
807 |
Q |
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| T |
38890993 |
ctctatcttatattttcatatgtttaatttgtagtagca |
38890955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 38891726 - 38891531
Alignment:
| Q |
9 |
acatgaacaagacagcgtgatagaagaaggcagtgcagtgcagtgcagtgcaggtccannnnnnnnaacgttggggggctattctgactgagatttgttt |
108 |
Q |
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| T |
38891726 |
acatgaacaagacagcgtgatagaagaaggcagtgcagtgcag----gtccagg-----gggggggaacgttggggggctattctgactgagatttgttt |
38891636 |
T |
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| Q |
109 |
cccttaacaaaaccaaacaaaagccaataaggtaagagaaagagaatattatgactcatacaaagaagaaaggaatagtcagaattaacaagtattattt |
208 |
Q |
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| T |
38891635 |
cccttaacaaaaccaaacaaaagccaataaggtaagagaaagagaatattatgactcatacaaagaagaaaggaatagtcagaattaacaagtattattt |
38891536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 860 - 934
Target Start/End: Complemental strand, 38890857 - 38890780
Alignment:
| Q |
860 |
aaaacactcctctattcaccataat-atgcggtgaaaagaacatgatataaac-tttgcatc-aaagcatgtattcca |
934 |
Q |
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| T |
38890857 |
aaaacactcctctattcaccatatttatgcggtgaaaagaacatgatataaacttttgcatcaaaagcatgtattcca |
38890780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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