View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709R-Insertion-5 (Length: 788)

Name: NF1709R-Insertion-5
Description: NF1709R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709R-Insertion-5
NF1709R-Insertion-5
[»] chr5 (25 HSPs)
chr5 (61-159)||(38178476-38178574)
chr5 (61-159)||(38205700-38205798)
chr5 (76-157)||(38156691-38156772)
chr5 (76-157)||(38221020-38221101)
chr5 (185-288)||(26032698-26032807)
chr5 (222-291)||(38181379-38181448)
chr5 (222-291)||(38189683-38189752)
chr5 (222-291)||(38216908-38216977)
chr5 (445-497)||(26032483-26032535)
chr5 (356-400)||(38456899-38456943)
chr5 (355-397)||(38171901-38171943)
chr5 (355-397)||(38181535-38181577)
chr5 (355-397)||(38189554-38189596)
chr5 (355-397)||(38208761-38208803)
chr5 (355-397)||(38216779-38216821)
chr5 (355-400)||(26032558-26032603)
chr5 (222-291)||(38456740-38456809)
chr5 (448-497)||(38456970-38457019)
chr5 (445-497)||(38171822-38171874)
chr5 (445-497)||(38181606-38181658)
chr5 (445-497)||(38189473-38189525)
chr5 (445-497)||(38208832-38208884)
chr5 (445-497)||(38216698-38216750)
chr5 (37-68)||(38156676-38156707)
chr5 (222-291)||(38208603-38208674)
[»] chr4 (4 HSPs)
chr4 (222-428)||(53350799-53351009)
chr4 (508-618)||(53350590-53350698)
chr4 (639-713)||(53350424-53350495)
chr4 (712-788)||(53350296-53350372)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 7e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 38178574 - 38178476
Alignment:
Q  61 tgaaattttgatactttatggaagtgaaatttcatttacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaactaga 159  Q
    |||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38178574 tgaaattttggtgctttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaactaga 38178476  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 38205798 - 38205700
Alignment:
Q  61 tgaaattttgatactttatggaagtgaaatttcatttacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaactaga 159  Q
    |||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38205798 tgaaattttggtgctttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaactaga 38205700  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 38156691 - 38156772
Alignment:
Q  76 ttatggaagtgaaatttcatttacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaacta 157  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38156691 ttatggaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaacta 38156772  T

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Target: chr5; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 38221020 - 38221101
Alignment:
Q  76 ttatggaagtgaaatttcatttacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaacta 157  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38221020 ttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaacta 38221101  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 185 - 288
Target Start/End: Complemental strand, 26032807 - 26032698
Alignment:
Q  185 atgctaggcatgtgcatttgtctgagaccaatttcgttga---aaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaa---ccttgatga 278  Q
    ||||||||| |||| ||||||||||||| |||||||||||   ||||||||||||| | |||||||| |||||||||||||||| |||   |||||||||    
T  26032807 atgctaggcgtgtgtatttgtctgagacaaatttcgttgatgaaaaagggaagaagcctatttcgttggaggacgatgttgaagcaaacctccttgatga 26032708  T
Q  279 cttgatggat 288  Q
    ||| ||||||    
T  26032707 cttcatggat 26032698  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 38181379 - 38181448
Alignment:
Q  222 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttg 291  Q
    |||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||||    
T  38181379 tgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttg 38181448  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 38189752 - 38189683
Alignment:
Q  222 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttg 291  Q
    |||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||||    
T  38189752 tgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttg 38189683  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 38216977 - 38216908
Alignment:
Q  222 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttg 291  Q
    |||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||||    
T  38216977 tgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttg 38216908  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 26032535 - 26032483
Alignment:
Q  445 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 497  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  26032535 gtctaaacgatgttatttgacagatgtattaaattaattctactttatgcaat 26032483  T

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Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 38456899 - 38456943
Alignment:
Q  356 gatataaaaagcttatagtgtttgcaacacaacttttctgtattt 400  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  38456899 gatataaaaagcttatattgtttgcaacacaacttttctgtattt 38456943  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 38171943 - 38171901
Alignment:
Q  355 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 397  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38171943 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38171901  T

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Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 38181535 - 38181577
Alignment:
Q  355 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 397  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38181535 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38181577  T

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Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 38189596 - 38189554
Alignment:
Q  355 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 397  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38189596 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38189554  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 38208761 - 38208803
Alignment:
Q  355 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 397  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38208761 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38208803  T

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Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 38216821 - 38216779
Alignment:
Q  355 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 397  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38216821 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38216779  T

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Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 355 - 400
Target Start/End: Complemental strand, 26032603 - 26032558
Alignment:
Q  355 cgatataaaaagcttatagtgtttgcaacacaacttttctgtattt 400  Q
    |||||||||||||||||||||||||||||||||  |||||||||||    
T  26032603 cgatataaaaagcttatagtgtttgcaacacaatgtttctgtattt 26032558  T

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Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 38456740 - 38456809
Alignment:
Q  222 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttg 291  Q
    |||||| ||||||||| ||||||| || ||||||||| |||||| |||||||||||| || |||||||||    
T  38456740 tgaaaatgggaagaagccaatttcattggaggacgattttgaagcaaaccttgatgatttcatggatttg 38456809  T

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Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 448 - 497
Target Start/End: Original strand, 38456970 - 38457019
Alignment:
Q  448 taaacgattttatttgatagatctattaaattaattctactttatgcaat 497  Q
    |||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  38456970 taaacgatgttatttgacagatatattaaattaattctactttatgcaat 38457019  T

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Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 38171874 - 38171822
Alignment:
Q  445 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 497  Q
    ||||||||||| |||||||| | ||||||||| ||||||| ||||||||||||    
T  38171874 gtctaaacgatgttatttgacaaatctattaagttaattccactttatgcaat 38171822  T

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Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 38181606 - 38181658
Alignment:
Q  445 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 497  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||||    
T  38181606 gtctaaacgatactatttgacaaatctataaaattaattctactttatgcaat 38181658  T

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Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 38189525 - 38189473
Alignment:
Q  445 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 497  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||||    
T  38189525 gtctaaacgatactatttgacaaatctataaaattaattctactttatgcaat 38189473  T

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Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 38208832 - 38208884
Alignment:
Q  445 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 497  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||||    
T  38208832 gtctaaacgatactatttgacaaatctataaaattaattctactttatgcaat 38208884  T

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Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 38216750 - 38216698
Alignment:
Q  445 gtctaaacgattttatttgatagatctattaaattaattctactttatgcaat 497  Q
    |||||||||||  ||||||| | |||||| |||||||||||||||||||||||    
T  38216750 gtctaaacgatactatttgacaaatctataaaattaattctactttatgcaat 38216698  T

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Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 38156676 - 38156707
Alignment:
Q  37 ggtaaatggtcactattatggaagtgaaattt 68  Q
    ||||||||||||||||||||||||||||||||    
T  38156676 ggtaaatggtcactattatggaagtgaaattt 38156707  T

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Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 38208603 - 38208674
Alignment:
Q  222 tgaaaaagggaagaaggcaatttcgttagagga-cgat-gttgaagaaaaccttgatgacttgatggatttg 291  Q
    |||||||||||||||| ||||||| || ||||| |||| ||||||| |||||||||||| || |||||||||    
T  38208603 tgaaaaagggaagaagccaatttcattggaggaccgatcgttgaagcaaaccttgatgatttcatggatttg 38208674  T

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Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 222 - 428
Target Start/End: Complemental strand, 53351009 - 53350799
Alignment:
Q  222 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttgtgtcttttgattgatttcagttcatatgat 321  Q
    ||||||||| |||||| ||||||| ||  ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||| ||||||| || | |     
T  53351009 tgaaaaaggaaagaagccaatttctttgaaggacgatgttgaagcaaaccttgatgacttgatggatccgtgtcttttgattgacttcagttgattttac 53350910  T
Q  322 aac-at----acagtaacttgcatgacaagcttccattcgatataaaaagcttatagtgtttgcaacacaacttttctgtatttagtgttttttcttctg 416  Q
    ||| ||    |||||||||||||||||||||| |||  |||| |||||||||||  ||||||||  | ||||||||| ||||||||| |||||  |||||    
T  53350909 aacgatgataacagtaacttgcatgacaagctcccacacgatgtaaaaagcttacggtgtttgcgtcgcaacttttcagtatttagt-tttttctttctg 53350811  T
Q  417 agaattgagttg 428  Q
    ||||||||||||    
T  53350810 agaattgagttg 53350799  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 508 - 618
Target Start/End: Complemental strand, 53350698 - 53350590
Alignment:
Q  508 attactcgttttggtcttagaactgtggctgagagaaaaatcatggttatccttctaacatttgtttggaggtaactatatataggacagaatatgacaa 607  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||  |||| |||||||| | ||||||    
T  53350698 attactctttttggtcttagaactgtggctgagaggaaaatcatggttatccttctaacattattttggaggtaac--tatacaggacagagtgtgacaa 53350601  T
Q  608 aactgatgtat 618  Q
    |||||||||||    
T  53350600 aactgatgtat 53350590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 639 - 713
Target Start/End: Complemental strand, 53350495 - 53350424
Alignment:
Q  639 aattactcaaatttgaaaaattattgttcacatattgtatatttttcagcccctccaagaaaaaagttcctagct 713  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53350495 aattactcaaatttgaaaaatt---gttcacatattgtatatttttcagcccctccaaggaaaaagttcctagct 53350424  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 712 - 788
Target Start/End: Complemental strand, 53350372 - 53350296
Alignment:
Q  712 ctttcatgttcttagcttttgccattgttctctttgaactcttgtttttgttttgagtccttgccctgctcattgtg 788  Q
    |||||||||||||   |||||| |||||||||||||||||||||||| |||||||||||| | | |||||| |||||    
T  53350372 ctttcatgttcttgcattttgctattgttctctttgaactcttgtttctgttttgagtccctcctctgctcgttgtg 53350296  T

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