View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1709R-Insertion-6 (Length: 703)
Name: NF1709R-Insertion-6
Description: NF1709R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709R-Insertion-6 |
 | |
|
| [»] scaffold0146 (5 HSPs) |
| | |
|
| [»] scaffold0915 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 699
Target Start/End: Complemental strand, 32472996 - 32472330
Alignment:
| Q |
9 |
tgaagtcttatagcaatttcttgaagctaggagctagagcagattagcaacttacaaaacaactagattactcatgaatttttcaatttctcaaaaatgt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32472996 |
tgaagtcttatagcaatttcttgaagctaggagctagagcagattagcaacttccaaaacaactagattactcatgaatttttcaatttctcaaaaatgt |
32472897 |
T |
|
| Q |
109 |
ttttcatcttttgttgatttgttgaaaaactatcataaattaattactcaaaaacttatgttatttagttgtcaaaacgtggagatatgaattgctacaa |
208 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32472896 |
ttttcatcttt-gttgatttgttgaaaaactatcataaattaattactcaaaaacttatgttatttagttgtcaaaacttggagatatgaattgctacaa |
32472798 |
T |
|
| Q |
209 |
tatgcagatgaaaagaggaactcaaaacaaaagtccaatgtttccgttatttatggatatgaaggnnnnnnngaaaagcttggccctggagaaagtggca |
308 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
32472797 |
catacaaatgaaaagaggaactcaaaacaaaagtccaatatttctgttatttatggatatgaaggaaaaaaagaaaagcttggccatggagaaagaggca |
32472698 |
T |
|
| Q |
309 |
attcttcaactgattgatgaggnnnnnnnnnttggtgaagctgtataattgatgaaacaagagtattgtagtgaaaatatgatgtataattgatgccaac |
408 |
Q |
| |
|
|||||||||| ||||||||||| || | ||||| |||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
32472697 |
attcttcaacagattgatgagga--------------aa-----aaaattggtgaaacaagagtattgtagtgacaatatgatgtataattgatgccagc |
32472617 |
T |
|
| Q |
409 |
aataggtagtgtgaattgaagaaaagcaacaaagatggagaagaagnnnnnnngacggagaaagtggaatggcaatggcaaacgtagagacataaattga |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32472616 |
aataggtagtgtgaattgaagaaaagcaacaaagatggagaagaagaaaaaaagacagagcaagtggaatggcaatggcaaacgtagagacataaattga |
32472517 |
T |
|
| Q |
509 |
agaaatgaatttagcggtagttaaactgccgtcatcgggtcctcaacgatagttaactaccgcggggggcaatttagtattttacttatgtctttaggaa |
608 |
Q |
| |
|
||||||||||| ||||||| || |||||||||| | |||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
32472516 |
agaaatgaattcagcggtaatt-aactgccgtcgttgggtcctcaacggtagttaactaccgcgggaggcattttagtattttact--tgtctttaggaa |
32472420 |
T |
|
| Q |
609 |
acttttgatgtcag-aaagcaactttcttaaatatttgtgaatacctattcctaaaataaataaaaaatgtagatacatattttcatatctt |
699 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| ||||| ||||||||||||| |||||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
32472419 |
acttttgatgtcagaaaagtaactttcttaattatttatgaatacctattcttaaaataaat-aaaaatgtagatgcata-tttcatatctt |
32472330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 621
Target Start/End: Original strand, 20086230 - 20086293
Alignment:
| Q |
558 |
tagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtca |
621 |
Q |
| |
|
|||||||||||||| || |||| || ||||||||| || |||| | |||||||||||||||||| |
|
|
| T |
20086230 |
tagttaactaccgctggaggcatttaagtattttatttgtgtcgtcaggaaacttttgatgtca |
20086293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 571
Target Start/End: Complemental strand, 36759045 - 36758495
Alignment:
| Q |
9 |
tgaagtcttatagcaatttcttgaagctaggagctagagcagattagcaacttacaaaacaactagattactcatgaatttttcaatttctcaaaaatgt |
108 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36759045 |
tgaagtcttattgcaatttcttgaagttaggagctagagcagattaacaacttccaaaacaactagattactcatgaattt--------ctcaaaaatgt |
36758954 |
T |
|
| Q |
109 |
ttttcatcttttgttgatttgttgaaaaactatcataaattaattactcaaaaacttatgttatttagttgtcaaaacgtggag-atatgaattgctaca |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| ||||| |||||||||||| || |
|
|
| T |
36758953 |
ttttcatcttt-gttgatttgttgaaaaagaatcataaattaattactaaaaaacttatgttatttacttgtcaaaacttggaggatatgaattgctgca |
36758855 |
T |
|
| Q |
208 |
atatgcagatgaaaagaggaactcaaaacaaaagtccaatgtttccgttatttatggatatgaaggnnnnnnngaaaagcttggccctggagaaagtggc |
307 |
Q |
| |
|
| || || ||||||| || ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| ||||||||| ||| |
|
|
| T |
36758854 |
acatacaaatgaaaaaagaaactcaaaacaaaagtccaatgtttatgttatttatggatataaagaaaaaaaacaaaagcttggccatggagaaagaggc |
36758755 |
T |
|
| Q |
308 |
aattcttcaactgattgatgaggnnnnnnnnnttggtgaagctgtataattgatgaaacaagagtattgtagtgaaaatatgatgtataattgatgccaa |
407 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36758754 |
aattcttcaagagattgatgaggaaaaaaaaattggtgaagctgtataattggtgaaacaagagtattgtagtgaaaatatgatgtataattgatgccaa |
36758655 |
T |
|
| Q |
408 |
caataggtagtgtgaattgaagaaaagcaacaaagatggagaagaagnnnnnnngacggagaaagtggaatggcaatggcaaacgtagagacataaattg |
507 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36758654 |
tagtaggtagtgtgaattgaagaaaagcaacaaagatgaagaagaagaaaagaagacagagaaagtggaatggcactggcaaacgtagagacataaattg |
36758555 |
T |
|
| Q |
508 |
aagaaatgaatttagcggtagttaaactgccgtcatcgggtcctcaacgatagttaactaccgc |
571 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
36758554 |
aagaaatgaattcagcggtagtt-aactaccg---ctgggtcctcaacggtagttaactaccgc |
36758495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 544 - 635
Target Start/End: Complemental strand, 36758494 - 36758402
Alignment:
| Q |
544 |
cgggtcctcaacgatagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcag-aaagcaactttct |
635 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| || |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36758494 |
cgggtcctcaacagtagttaactaccgctggggacattttaatattttactcttgtctttaggaaacttttgatgtcagaaaagcaactttct |
36758402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 625
Target Start/End: Complemental strand, 3777775 - 3777708
Alignment:
| Q |
558 |
tagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaa |
625 |
Q |
| |
|
||||||||||||| | ||||| |||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3777775 |
tagttaactaccgttgagggcattttaatattttacttatgtctttagaaaacttttgatgtcagaaa |
3777708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 9 - 454
Target Start/End: Original strand, 21761508 - 21761950
Alignment:
| Q |
9 |
tgaagtcttatagcaatttcttgaagctaggagctagagcagattagcaacttacaaaacaactagattactcatgaatttttcaatttctcaaaaatgt |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21761508 |
tgaagtcttataacaatttcttgaagctaggagctagagcagattaacaacttccaaaacaactagattactcatgaatttctcaatttctcaaaaatgt |
21761607 |
T |
|
| Q |
109 |
ttttcatcttttgttgatttgttgaaaaactatcataaattaattactcaaaaacttatgttatttagttgtcaaaacgtgga-gatatgaattgctaca |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| |||| ||||||||||| | || |
|
|
| T |
21761608 |
ttttcatc-tttgttgatttgttgaaaaacaatcataaattaatcactcaaaaacttatgttatttacttgtcaaaacttggaggatatgaattgttgca |
21761706 |
T |
|
| Q |
208 |
atatgcagatgaaaagaggaactcaaaacaaaagtccaatgtttccgttatttatggatatgaag-gnnnnnnngaaaagcttggccctggagaaagtgg |
306 |
Q |
| |
|
| || || || |||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||||| || |
|
|
| T |
21761707 |
acatacaaataaaaagaggaattcaaaacaaaagtcgaatgtttctgttatttatggatatgaagaaaaaaaatcaaaagcttggccatggagaaagagg |
21761806 |
T |
|
| Q |
307 |
caattcttcaactgattgatgaggnnnnnnnnnttggtgaagctgtataattgatgaaacaagagtattgtagtgaaaatatgatgtataattgatgcca |
406 |
Q |
| |
|
|||||||||||| | ||||||| || || |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
21761807 |
caattcttcaacag---gatgagg-aaaaaaaattcgtaaagctgtataattggtgaaacaagagtattgtagtgaaagtatgatgtataattgatgcta |
21761902 |
T |
|
| Q |
407 |
acaataggtagtgtgaattgaagaaaagcaacaaagatggagaagaag |
454 |
Q |
| |
|
||| | |||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
21761903 |
acagttggtagtgtgaattgaagagaagaaacaaagatggagaagaag |
21761950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 22 - 434
Target Start/End: Original strand, 37770334 - 37770741
Alignment:
| Q |
22 |
caatttcttgaagctaggagctagagcagattagcaacttacaaaacaactagattactcatgaatttttcaatttctcaaaaatgtttttcatcttttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
37770334 |
caatttcttgaagctaggagctagagcatattaacaacttccaaaacaactagattactcatgaatttctcaatttctcaaaattgtttttcatc-tttg |
37770432 |
T |
|
| Q |
122 |
ttgatttgttgaaaaactatcataaattaattactcaaaaacttatgttatttagttgtcaaaacgtggagatatgaattgctacaatatgcagatgaaa |
221 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| ||| || || |||||| |
|
|
| T |
37770433 |
ttgatttgttgaaaaacaatcataaattaattattcaaaaacttatgttatttacttgtcaaa-----ttgatatgaattgctgcaacatacaaatgaaa |
37770527 |
T |
|
| Q |
222 |
agaggaactcaaaacaaaagtccaatgtttccgttatttatggatatgaag-----gnnnnnnngaaaagcttggccctggagaaagtggcaattcttca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| | || ||||| ||||| |||||| |
|
|
| T |
37770528 |
agaggaactcaaaacaaaagtccaatgtttctattatttat-gatatgaagaaaaaaaaaaaaacaaaagcttggtcatg--gaaagaggcaactcttca |
37770624 |
T |
|
| Q |
317 |
actgattgatgaggnnnnnnnnnttggtgaagctgtataattgatgaaacaagagtattgtagtgaaaatatgatgtataattgatgccaacaataggta |
416 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || | |||||| |
|
|
| T |
37770625 |
tcagattgatgagg-aaaaaaaattggtgaagctgtataattggtgaaacaagagtattgtagtgaaagtatgatgtataattgatgtcagcggtaggta |
37770723 |
T |
|
| Q |
417 |
gtgtgaattgaagaaaag |
434 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37770724 |
gtgtgaattgaagaaaag |
37770741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 593
Target Start/End: Complemental strand, 37770287 - 37770236
Alignment:
| Q |
542 |
atcgggtcctcaacgatagttaactaccgcggggggcaatttagtattttac |
593 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
37770287 |
atcggatcctcaacgatagttaactaccgttgggggcatttaagtattttac |
37770236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 553 - 621
Target Start/End: Complemental strand, 18981565 - 18981497
Alignment:
| Q |
553 |
aacgatagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtca |
621 |
Q |
| |
|
|||| |||||||||| ||| |||| || || |||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
18981565 |
aacggtagttaactatcgctggggacatttaagtattttacttgtgtctttaggaagttttttatgtca |
18981497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 203; Significance: 1e-110; HSPs: 5)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 67 - 454
Target Start/End: Complemental strand, 24994 - 24605
Alignment:
| Q |
67 |
acaactagattactcatgaatttttcaatttctcaaaaatgtttttcatcttttgttgatttgttgaaaaactatcataaattaattactcaaaaactta |
166 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24994 |
acaactagattactcatgaatttctcaatttctcaaaaatgtttttcatcttt-gttgatttgttgaaaaacaatcataaattaattactcaaaaactta |
24896 |
T |
|
| Q |
167 |
tgttatttagttgtcaaaacgtgga-gatatgaattgctacaatatgcagatgaaaagaggaactcaaaacaaaagtccaatgtttccgttatttatgga |
265 |
Q |
| |
|
||||||||| || ||||||| |||| ||||| |||||| ||| || || ||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
24895 |
tgttatttacttatcaaaacttggaggatatttattgctgcaacatacaaatgaaaagaggaactcaaaacaaaattccaatgtttatgttatttatgga |
24796 |
T |
|
| Q |
266 |
tatgaag-gnnnnnnngaaaagcttggccctggagaaagtggcaattcttcaactgattgatga-ggnnnnnnnnnttggtgaagctgtataattgatga |
363 |
Q |
| |
|
||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | |||||||||||||||||||| ||| |
|
|
| T |
24795 |
tatgaagaaaaaaaaacaaaagcttggccatggagaaagaggcaattcttcaatagattgatgatgatttttttttttggtgaagctgtataattggtga |
24696 |
T |
|
| Q |
364 |
aacaagagtattgtagtgaaaatatgatgtataattgatgccaacaataggtagtgtgaattgaagaaaagcaacaaagatggagaagaag |
454 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24695 |
aacaagagtattgtagtgaaagtatgatgtataattgctgccagcagtaggtagtgtgaattgaagaaaagtaacaaagatggagaagaag |
24605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 29828 - 29767
Alignment:
| Q |
9 |
tgaagtcttatagcaatttcttgaagctaggagctagagcagattagcaacttacaaaacaa |
70 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
29828 |
tgaaatcttatagcaatttcttgaagctaggagctagagcagattaacaacttccaaaacaa |
29767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 32170 - 32105
Alignment:
| Q |
9 |
tgaagtcttatagcaatttcttgaagctaggagctagagcagattagcaacttacaaaacaactag |
74 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
32170 |
tgaaatcttatagcaatttcttgaagctaggagctagagcagattaacaacctccaaaacaactag |
32105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 544 - 600
Target Start/End: Original strand, 32315 - 32371
Alignment:
| Q |
544 |
cgggtcctcaacgatagttaactaccgcggggggcaatttagtattttacttatgtc |
600 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| || |||||||||||| |||| |
|
|
| T |
32315 |
cgggtcctcaacggtagttaactaccgctgggggcatttaagtattttacttgtgtc |
32371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 595
Target Start/End: Original strand, 29973 - 30024
Alignment:
| Q |
544 |
cgggtcctcaacgatagttaactaccgcggggggcaatttagtattttactt |
595 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| || |||||||||||| |
|
|
| T |
29973 |
cgggtcctcaacggtagttaactaccgctaggggcatttaagtattttactt |
30024 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 159 - 454
Target Start/End: Complemental strand, 43036236 - 43035940
Alignment:
| Q |
159 |
aaaacttatgttatttagttgtcaaaacgtggag-atatgaattgctacaatatgcagatgaaaagaggaactcaaaacaaaagtccaatgtttccgtta |
257 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| |||| ||||||| ||| || || |||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
43036236 |
aaaacttatgttatttacttgtcaaaacttggaggatattaattgcttcaacatacaaatgaaaaggggaactcaaaacaaaagtccaatgtttctgtta |
43036137 |
T |
|
| Q |
258 |
tttatggatatgaaggnnnnnnngaaaa-gcttggccctggagaaagtggcaattcttcaactgattgatgaggnnnnnnnnnttggtgaagctgtataa |
356 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||||| |||||||||||||| ||| |||||| ||||||||||||||||| |
|
|
| T |
43036136 |
tttatggatatgaagaaaaaaaaaaaaaagcttggccatggagaaagaggcaattcttcaacaaattaatgaggaaaaaaaa-ttggtgaagctgtataa |
43036038 |
T |
|
| Q |
357 |
ttgatgaaacaagagtattgtagtgaaaatatgatgtataattgatgccaacaataggtagtgtgaattgaagaaaagcaacaaagatggagaagaag |
454 |
Q |
| |
|
||| ||||||||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43036037 |
ttggtgaaacaagagtattgtggtgaaagtatgatgtataattgatgccagcagtaggtagtgtgaattgaagaaaagcaacaaagatgtagaagaag |
43035940 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 43036345 - 43036233
Alignment:
| Q |
9 |
tgaagtcttatagcaatttcttgaagctaggagctagagcagattagcaacttacaaaacaactagattactcatgaatttttcaatttctcaaaaatgt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
43036345 |
tgaagtcttatagcaatttcttgaagctaggagc------agattaacaacttccaaaacaactacattactcatgaattt--------ctcaaaaatgt |
43036260 |
T |
|
| Q |
109 |
ttttcatcttttgttgatttgttgaaaa |
136 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
43036259 |
ttttcatc-tttgttgatttgttgaaaa |
43036233 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 600
Target Start/End: Original strand, 43036460 - 43036516
Alignment:
| Q |
544 |
cgggtcctcaacgatagttaactaccgcggggggcaatttagtattttacttatgtc |
600 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| || |||||||||||| |||| |
|
|
| T |
43036460 |
cgggtcctcaacggtagttaactaccgctaggggcatttaagtattttacttgtgtc |
43036516 |
T |
|
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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 44629325 - 44629357
Alignment:
| Q |
213 |
cagatgaaaagaggaactcaaaacaaaagtcca |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
44629325 |
cagatgaaaagaggaactcaaaacaaaagtcca |
44629357 |
T |
|
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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 53897655 - 53897703
Alignment:
| Q |
552 |
caacgatagttaactaccgcggggggcaatttagtattttacttatgtc |
600 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||| |||||| |||| |
|
|
| T |
53897655 |
caacgatagttaactaccgctgggggctatttagtaaattacttgtgtc |
53897703 |
T |
|
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 634
Target Start/End: Complemental strand, 27866903 - 27866812
Alignment:
| Q |
544 |
cgggtcctcaacgatagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcag-aaagcaactttc |
634 |
Q |
| |
|
|||||| |||||| |||||||||||||| | ||||| || | |||||||||| ||| ||||||| ||||||||| |||| |||||||||||| |
|
|
| T |
27866903 |
cgggtcttcaacggtagttaactaccgctgagggcatttaaatattttacttgtgtttttaggagacttttgatttcagaaaagcaactttc |
27866812 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 600
Target Start/End: Original strand, 47317776 - 47317829
Alignment:
| Q |
547 |
gtcctcaacgatagttaactaccgcggggggcaatttagtattttacttatgtc |
600 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || |||||||||||| |||| |
|
|
| T |
47317776 |
gtcctcaacggtagttaactaccgctgggggcatttaagtattttacttgtgtc |
47317829 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 624
Target Start/End: Original strand, 28985278 - 28985350
Alignment:
| Q |
552 |
caacgatagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaa |
624 |
Q |
| |
|
||||| || |||||||||| ||||| ||||| || ||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
28985278 |
caacggtacttaactaccgttgggggtaatttcgtcatttacttgtgtttttaggaaacttttgatgtcagaa |
28985350 |
T |
|
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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 608
Target Start/End: Complemental strand, 21166448 - 21166399
Alignment:
| Q |
559 |
agttaactaccgcggggggcaatttagtattttacttatgtctttaggaa |
608 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||||| ||| |||||||| |
|
|
| T |
21166448 |
agttaactaccgctgggggtattttagtattttacttgtgtttttaggaa |
21166399 |
T |
|
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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 44006482 - 44006405
Alignment:
| Q |
548 |
tcctcaacgatagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaa |
625 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||| || ||||||||||||||||| || |||| ||| |||||||||| |
|
|
| T |
44006482 |
tcctgaacggtagttaactaccgctgggggcatttaagtattttacttatgtcattgtgaaattttcaatgtcagaaa |
44006405 |
T |
|
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 625
Target Start/End: Original strand, 37460532 - 37460599
Alignment:
| Q |
558 |
tagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaa |
625 |
Q |
| |
|
|||||||||||||| || || ||||| || ||||||| |||| ||||||||| |||||||||||||| |
|
|
| T |
37460532 |
tagttaactaccgctggaggtaattttgtcatttacttgtgtcattaggaaacatttgatgtcagaaa |
37460599 |
T |
|
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Target: scaffold0915 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0915
Description:
Target: scaffold0915; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 624
Target Start/End: Original strand, 784 - 856
Alignment:
| Q |
552 |
caacgatagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaa |
624 |
Q |
| |
|
||||| || |||||||||| ||||| ||||| || ||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
784 |
caacggtacttaactaccgttgggggtaatttcgtcatttacttgtgtttttaggaaacttttgatgtcagaa |
856 |
T |
|
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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 604
Target Start/End: Complemental strand, 34457018 - 34456966
Alignment:
| Q |
552 |
caacgatagttaactaccgcggggggcaatttagtattttacttatgtcttta |
604 |
Q |
| |
|
|||||||||||||||||||| | ||||| || |||||||||||| |||||||| |
|
|
| T |
34457018 |
caacgatagttaactaccgctgagggcatttaagtattttacttgtgtcttta |
34456966 |
T |
|
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