View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_high_1 (Length: 768)
Name: NF1709_high_1
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 10 - 580
Target Start/End: Original strand, 43278891 - 43279458
Alignment:
| Q |
10 |
attatactgttatatatgtgtttagagacataggatggaaagttgggagatagtggtgtgtgaactgtttttacgggttaatgtatcaggggaagttgtg |
109 |
Q |
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| T |
43278891 |
attatactgttatatatgtgtttagagacataggatggaaagttgggagatagtggtgtgtgaactgtttttacgggttaatgtatcaggggaagttgtg |
43278990 |
T |
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| Q |
110 |
aaggattgattggcatcaattgaatttggaactagtgaaaaggtcatttacgagggagagaaaaggtcactatgctgctagctaatattgaaattgacat |
209 |
Q |
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| T |
43278991 |
aaggattgatcggcatca-ttgaatttggaaccagtgaaaaggtcatttacgagggagagaaaaggtcactatgctgctagctaatattgaaattgacat |
43279089 |
T |
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| Q |
210 |
ggaaatggttacaagaatagaagaatggagttaaacgaagtggcaattttcgatataaattagaacccaacnnnnnnnnnnnnnnnnnnnagcttcgata |
309 |
Q |
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| T |
43279090 |
ggaaattgttacaagaatagaagaatggagttaaacgaagtggcaattttcgatataaattagaacccaacatatatattatataatataagcttcgata |
43279189 |
T |
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| Q |
310 |
agcacgggtaagagaaggagaaaaatcagtaggagtatgtgttgatcatgtgcagataaaactgcaagatatgtgccaaatgaccgttattgtagaggag |
409 |
Q |
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| T |
43279190 |
agcacgggtaagtgaaggagaaaaatcagtaggagtatgtgttgctcatgtgcagataaaactgcaagatatgtgccaaatgaccgttattgtagaggag |
43279289 |
T |
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| Q |
410 |
aaaattaaggaaggacttgacacacatatgtgagtggtgcttgttgctattatcgagcaagacatggctataataggctaattaacaagagtaaacatga |
509 |
Q |
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| T |
43279290 |
aaaattaaggaaggacttgacacacatatgtgagtggtggttgttgctattatcgagcaagacatggc--taataggctaattaacaagagtaaacatga |
43279387 |
T |
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| Q |
510 |
ctaatgagggagacgtgtctttgactcagcaaacaaaagggaagcatatggtcaaattagttgaatgaata |
580 |
Q |
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| T |
43279388 |
ctaatgagggagacgtgtctttgactcagcaaacaaaagggaagcatatggtcaaattagttgaatgaata |
43279458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 503 - 754
Target Start/End: Complemental strand, 55161389 - 55161133
Alignment:
| Q |
503 |
aacatgactaatgagggagacgtgtctttgactcagcaaacaaaagggaagcatatggtcaaattagttgaatgaat-----aaagataggaaacaattt |
597 |
Q |
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| T |
55161389 |
aacatgactaatgagggagacgtgtctttgactcaacaaacaaaagggaagcatatggtcaaattagttgaatgaattgagtaaagataggaaacaattt |
55161290 |
T |
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| Q |
598 |
agcacatcaataacccacctgataaaagaatgagatcaagtccaaacatatagagcattgctactagtgcatatagataatttggcaaccacaatctcta |
697 |
Q |
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| T |
55161289 |
agcacaacaataacccacgtgataatagaatgagatcaagtccaaacatatagagcattgctactagtgcatatagataatttggtaaccacaatctcta |
55161190 |
T |
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| Q |
698 |
atagctactgaagtcacggcaagtagacaatttaaatagatacactactaataattg |
754 |
Q |
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| T |
55161189 |
atagctactgaagtcacgacaagtagacaatttaaatagatacactactaataattg |
55161133 |
T |
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