View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_high_14 (Length: 395)
Name: NF1709_high_14
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_high_14 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 35345 - 34985
Alignment:
| Q |
18 |
ccatgagccccccaccacatttgtgagttccaagataggctatataaggaactttttggccattaatgaaagaaagcaccacatgaaaacgatttgtaag |
117 |
Q |
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| T |
35345 |
ccatgagccccccaccacatttgtgagttccaagataggctatataaggaactttttggccattaatgaaagaaagcaccacatgaaaacgatttgtaag |
35246 |
T |
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| Q |
118 |
cacttgaaaagcaagatcttacacgtgtcaaactaaactcaaattgtaccccaaaattcatttcaattccaaattcaggggcacagaagcttccctccca |
217 |
Q |
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| T |
35245 |
cacttgaaaagcaaaatcttacacgtgtcaaactaaactcaaattgtaccccaaaattcatttcaattccaaattcaggggcacagaagcttccctccca |
35146 |
T |
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| Q |
218 |
agcaatggtcagtttaatcttccttcattcatacgtacactctcactcaatcaaaccatatgacccatcaatgatattctcatttgctttaannnnnnna |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35145 |
agcaatggtcagtttaatcttccttcattcatacgtacactctcactcaatcaaaccatatgacccatcaatgatattctcatttgctttaatttttt-- |
35048 |
T |
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| Q |
318 |
agtttcaattttgccctctgttttttcagaaattatccattgatgagagagaaccccaataccc |
381 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35047 |
agtttcaattttgccctctgtttttt-agaaattatccattgatgagagagaaccccaataccc |
34985 |
T |
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