View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1709_high_2 (Length: 722)
Name: NF1709_high_2
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 32833239 - 32833586
Alignment:
| Q |
10 |
catcatcatacatcataaaagccactttttaattatctttaaataaaagccactacttaataatgtttaaaattgttatcctgacagatatgcataaatt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833239 |
catcatcatacatcataaaagccactttttaattatctttaaataaaagccactacttaataatgtttaaaattgttatcctgacagatatgcataaatt |
32833338 |
T |
|
| Q |
110 |
taagaataaccgtcactaaaatttcaagcacaagttcatatcccataacataatccaatatatcaaatggaaacttacatcaagtgaacattacaaacat |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32833339 |
taagaataaccgtcactaaaatttcaagcacaagttcatatcccataacataatccaatatatcaaatggaaacttacatcaagcgaacattacaaacat |
32833438 |
T |
|
| Q |
210 |
aaagtaaagtatatatattatgctgaattaatattttcccccactcatttataagtttatcagcataaagtaagatgcaattaagcgttgaagataatta |
309 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
32833439 |
aaagtaaagtatatatattatgctgaattaatattttaccccactcatttataagtttatcagcataaagtaagatgcaattaagcatttaagataatta |
32833538 |
T |
|
| Q |
310 |
gattaacaagcttgattaagggtgagttagtatagtgtcaaccaaaag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32833539 |
gattaacaagcttgattaagggtgagttagtatagtgtcaaccaaaag |
32833586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 384 - 708
Target Start/End: Original strand, 32833617 - 32833941
Alignment:
| Q |
384 |
gaaaacagttagaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaaagtcactcactatataataatgat |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32833617 |
gaaaacagttagaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaacgtcactcactatataataatgat |
32833716 |
T |
|
| Q |
484 |
cagtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactc |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32833717 |
cagtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactc |
32833816 |
T |
|
| Q |
584 |
tcaagatcctccatcctcacccaaaaacaaacctccatttgattcgcaacaaccacattcatcttctgcaccggaacaatctgcctctggatcaaagaaa |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
32833817 |
tcaagatcctccatcctcacccaaaaacaaacctccatctgattcgcaacaaccacattcatcttctgcaccggaacaatctgccaccggatcaaagaaa |
32833916 |
T |
|
| Q |
684 |
cctgcctccactacgggacaagatg |
708 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32833917 |
cctgcctccactacgggacaagatg |
32833941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 384 - 708
Target Start/End: Original strand, 32840031 - 32840355
Alignment:
| Q |
384 |
gaaaacagttagaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaaagtcactcactatataataatgat |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
32840031 |
gaaaacagttagaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaacgtcactcactatataataatgat |
32840130 |
T |
|
| Q |
484 |
cagtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactc |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32840131 |
cagtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactc |
32840230 |
T |
|
| Q |
584 |
tcaagatcctccatcctcacccaaaaacaaacctccatttgattcgcaacaaccacattcatcttctgcaccggaacaatctgcctctggatcaaagaaa |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
32840231 |
tcaagatcctccatcctcacccaaaaacaaacctccatctgattcgcaacaaccacattcatcttctgcaccggaacaatctgcctccggatcaaagaaa |
32840330 |
T |
|
| Q |
684 |
cctgcctccactacgggacaagatg |
708 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
32840331 |
cctgcctccagtacgggacaagatg |
32840355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 402 - 639
Target Start/End: Original strand, 29605235 - 29605472
Alignment:
| Q |
402 |
gttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaaagtcactcactatataataatgatcagtatcacaaatcaatc |
501 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29605235 |
gttacggttagagttacttgtgaagcaagtttccaattcaaacaagcatacactgaaacgtcactcactatataataatgatcagtatcacaaatcaatc |
29605334 |
T |
|
| Q |
502 |
ataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagatcctccatcctc |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||||| ||||||| |
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|
| T |
29605335 |
ataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactgattaaccaaagaaacctcaagatcttccatccaa |
29605434 |
T |
|
| Q |
602 |
acccaaaaacaaacctccatttgattcgcaacaaccac |
639 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||||| |
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|
| T |
29605435 |
tcccaaaaatcaacctccatctgattcacaacaaccac |
29605472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 228 - 357
Target Start/End: Original strand, 32839879 - 32840008
Alignment:
| Q |
228 |
tatgctgaattaatattttcccccactcatttataagtttatcagcataaagtaagatgcaattaagcgttgaagataattagattaacaagcttgatta |
327 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |
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|
| T |
32839879 |
tatgctgaattaatatttttccccactcatttataagtttaccagcataaagtaagatgcaattaaacattgaagagaattagattaacaagcttgatta |
32839978 |
T |
|
| Q |
328 |
agggtgagttagtatagtgtcaaccaaaag |
357 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
|
|
| T |
32839979 |
agtgtgagttagtatagtgtcaaccaaaag |
32840008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 32839780 - 32839845
Alignment:
| Q |
156 |
aacataatccaatatatcaaatggaaacttacatcaagtgaacattacaaacataaagtaaagtat |
221 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
32839780 |
aacataatccaataaatgaaatggaaacttaaatcaagtgaacattacaaacataatgtaaagtat |
32839845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 29605042 - 29605080
Alignment:
| Q |
256 |
atttataagtttatcagcataaagtaagatgcaattaag |
294 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
29605042 |
atttatatgtttatcagcacaaagtaagatgcaattaag |
29605080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 409 - 590
Target Start/End: Complemental strand, 19947009 - 19946835
Alignment:
| Q |
409 |
ttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaaagtcactcactatataataatgatcagtatcacaaatcaatcataataa |
508 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| |||||||||||||| |||| |||| | |||||||||| || |||||||||| ||||| ||||| |
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|
| T |
19947009 |
ttagagttacttgtgaagcaagcttctagttccaacaagcatacact--aaag-cact-agtatataataacaatgtgtatcacaaaataatcacaataa |
19946914 |
T |
|
| Q |
509 |
catttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagat |
590 |
Q |
| |
|
||||||||||||| |||| |||| || | ||||||||| ||| |||||||||||||| | ||| |||||||| | |||||| |
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|
| T |
19946913 |
catttcacatttttcata--ctctcttgtgagaaagaaa-aaaactctcaacatgactgattcagcaaagaacacccaagat |
19946835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 19947296 - 19947235
Alignment:
| Q |
394 |
agaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacact |
455 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||| | ||| || ||||||||||| |
|
|
| T |
19947296 |
agaagtctgttacagttagagttacttgtgaagcaagtttctagttccaaaaagcatacact |
19947235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 19961187 - 19961148
Alignment:
| Q |
255 |
catttataagtttatcagcataaagtaagatgcaattaag |
294 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
19961187 |
catttataagtttatcagcacaaagtaagatgcagttaag |
19961148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 590
Target Start/End: Complemental strand, 28405835 - 28405748
Alignment:
| Q |
504 |
aataacatttcacattttccatattctcttttctcagaaagaa-agaaacctctcaacatgactcaatcaccaaagaactctcaagat |
590 |
Q |
| |
|
||||||| |||||||||| ||| || |||| | |||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |
|
|
| T |
28405835 |
aataacacttcacattttgtatactcaattttgtgagaaagaagagaaacctcttaacatggctcaatcaccaaagaacgatcaagat |
28405748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 436
Target Start/End: Complemental strand, 28405906 - 28405871
Alignment:
| Q |
401 |
agttacagttagagttacttgtgaagcaagcttcca |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28405906 |
agttacagttagagttacttgtgaagcaagtttcca |
28405871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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