View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_high_21 (Length: 333)
Name: NF1709_high_21
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 318
Target Start/End: Original strand, 5829747 - 5830059
Alignment:
| Q |
7 |
actttctggttctggagcatgattgtgctcaatcctctaatcacctgaattgtgatt-agaagaatgagttgtttcctcctccttgcgcacaagatcctc |
105 |
Q |
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| T |
5829747 |
actttctggttctggagcatgattgtgctcaatcctctaatcacctgaattgtgatttagaagaatgagttgtttcatcctccttgcgcacaagatcctc |
5829846 |
T |
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| Q |
106 |
ttcctcatgactattgtggggttcatcctcacatgtgtatcatcaaaaaggcaattatcatcttcacgattgtattccaaattctcgggttgtggatcag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5829847 |
ttcctcatgactattgtggggttcatcctcacatgtgtatcatcaaaaagacgattatcatcttcacgattgcattccaaattctcgggttgtggatcag |
5829946 |
T |
|
| Q |
206 |
cgcacacattaatcacatattgatatttatgcttgctagttcttgcatcattcgctggagagacaacaacaggctttaccagtaggtttcttaccattga |
305 |
Q |
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| T |
5829947 |
cgcacacatcaatcacatattgatatttatgcttgctagttcttgcatcattcgctggagagacaacaacaggctttaccagtaggtttcttaccattga |
5830046 |
T |
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| Q |
306 |
cttcacttgttcg |
318 |
Q |
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||||||||||||| |
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| T |
5830047 |
cttcacttgttcg |
5830059 |
T |
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