View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709_high_34 (Length: 258)

Name: NF1709_high_34
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709_high_34
NF1709_high_34
[»] chr6 (5 HSPs)
chr6 (1-243)||(22818720-22818962)
chr6 (131-243)||(11766744-11766854)
chr6 (135-243)||(4061956-4062063)
chr6 (156-230)||(11638831-11638905)
chr6 (165-212)||(3593965-3594012)
[»] chr1 (1 HSPs)
chr1 (1-243)||(41077262-41077505)
[»] chr7 (7 HSPs)
chr7 (131-243)||(21371134-21371244)
chr7 (72-243)||(36056660-36056834)
chr7 (135-243)||(40645054-40645161)
chr7 (135-243)||(11364392-11364499)
chr7 (135-243)||(45850500-45850607)
chr7 (70-119)||(45850429-45850478)
chr7 (41-119)||(40645186-40645267)
[»] chr3 (5 HSPs)
chr3 (1-243)||(20591434-20591686)
chr3 (135-243)||(3571525-3571632)
chr3 (41-119)||(3571423-3571503)
chr3 (165-212)||(2889835-2889882)
chr3 (155-221)||(40011064-40011130)
[»] chr5 (2 HSPs)
chr5 (135-243)||(34504062-34504169)
chr5 (31-119)||(34503947-34504038)
[»] chr4 (3 HSPs)
chr4 (1-236)||(9102407-9102653)
chr4 (152-230)||(17388452-17388530)
chr4 (136-230)||(17034023-17034117)
[»] scaffold0462 (1 HSPs)
scaffold0462 (1-236)||(11980-12226)
[»] chr2 (2 HSPs)
chr2 (176-237)||(28841585-28841646)
chr2 (165-212)||(16182167-16182214)
[»] chr8 (2 HSPs)
chr8 (177-237)||(20789763-20789823)
chr8 (165-206)||(5705544-5705585)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 22818962 - 22818720
Alignment:
Q  1 tatgttgaacattgtacagctggtattgtagacttatgggatatggtgtgtaattaaatattacaataatgtgtttcttatgtttttttaaagttaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22818962 tatgttgaacattgtacagctggtattgtagacttatgggatatggtgtgtaattaaatattacaataatgtgtttcttatgtttttttaaagttaattt 22818863  T
Q  101 gatattataatatgttatcannnnnnnnnnccaaatttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagt 200  Q
    ||||||||||||||||||||          ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22818862 gatattataatatgttatcattttttttttccagatttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagt 22818763  T
Q  201 ttgattttggaaagactttgatgtaatttaattatgtcaataa 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22818762 ttgattttggaaagactttgatgtaatttaattatgtcaataa 22818720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 11766744 - 11766854
Alignment:
Q  131 ccaaatttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaattta 230  Q
    ||||| |||||||||||||  || |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  11766744 ccaaaattttggagacaaa--tccgtttactgatgatgaaatgacaaatgttcaagaacgctatgcaaatttgattttggaaagactttgatgtaattta 11766841  T
Q  231 attatgtcaataa 243  Q
    |||||||||||||    
T  11766842 attatgtcaataa 11766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 4061956 - 4062063
Alignment:
Q  135 atttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaatttaatta 234  Q
    |||||||||||| ||  || |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||  |||||||||||||||||    
T  4061956 atttttggagacgaaactccgtttactgatgatgaaatgacaaaagttcaagaacgttgtgcaagtttgattttggaaaga-gttgatgtaatttaatta 4062054  T
Q  235 tgtcaataa 243  Q
    |||||||||    
T  4062055 tgtcaataa 4062063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 11638831 - 11638905
Alignment:
Q  156 tttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaattta 230  Q
    ||||||||||||||||| | ||| ||||||||||||| ||||||||||||| | |||||||||||||||||||||    
T  11638831 tttactgatgatgaaattataaaagttcaagaacgctatgcaagtttgattcttgaaagactttgatgtaattta 11638905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 3593965 - 3594012
Alignment:
Q  165 gatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaa 212  Q
    |||||| | ||||||||||||||||||||||||| ||||||| |||||    
T  3593965 gatgaagttaaaaatgttcaagaacgctgtgcaaatttgattctggaa 3594012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 41077262 - 41077505
Alignment:
Q  1 tatgttgaacattgtac-agctggtattgtagacttatgggatatggtgtgtaattaaatattacaataat--gtgtttcttatgtttttttaaagttaa 97  Q
    ||||||||||||||||  ||||||||||   |||| |||||||||||||||||| ||||||||||||| ||  |||||||||||||||||||||||||||    
T  41077262 tatgttgaacattgtattagctggtattaccgactcatgggatatggtgtgtaactaaatattacaatcatttgtgtttcttatgtttttttaaagttaa 41077361  T
Q  98 tttgatattataatatgttatcannnnnnnnnnccaaatttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgca 197  Q
    ||||||||| |  |||  ||  |           || ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  41077362 tttgatattctgttatccta--attttttttcttcagatttttggagacaaaaatctgtttaccgatgatgaaatgacaaatgttcaagaacgttgtgca 41077459  T
Q  198 agtttgattttggaaagactttgatgtaatttaattatgtcaataa 243  Q
    | |||||||||| |||||||||||||||||||||||||||||||||    
T  41077460 aatttgattttgaaaagactttgatgtaatttaattatgtcaataa 41077505  T

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Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 21371244 - 21371134
Alignment:
Q  131 ccaaatttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaattta 230  Q
    ||||| |||||||||||||  || |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  21371244 ccaaaattttggagacaaa--tccgtttactgatgatgaaatgacaaatgttcaagaacgctatgcaaatttgattttggaaagactttgatgtaattta 21371147  T
Q  231 attatgtcaataa 243  Q
    |||||||||||||    
T  21371146 attatgtcaataa 21371134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 72 - 243
Target Start/End: Original strand, 36056660 - 36056834
Alignment:
Q  72 tgtttcttatgtttttttaaagttaatttgatattataatatgttatcannnnnnnnnn----ccaaatttttggagacaaagatctgtttactgatgat 167  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||               ||| |||||||||||||||  | ||||||||||||||    
T  36056660 tgtttcttatgtttttttaaagttaatttcatattctaatatgttatcttaacttctttttttccagatttttggagacaaaattttgtttactgatgat 36056759  T
Q  168 gaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaatttaattatgtcaataa 243  Q
    |||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  36056760 gaaatgaaaaatgttcaagaacaccgtgcaagtttgattttggaaatac-ttgatgtaatttaattatgtcaataa 36056834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 40645161 - 40645054
Alignment:
Q  135 atttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaatttaatta 234  Q
    |||||||||||||||  || |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  40645161 atttttggagacaaaactccgtttactgatgatgaaatgacaaaagttcaagaacgctgtgcaagtttgattttggaaaga-gttgatgtaatttaatta 40645063  T
Q  235 tgtcaataa 243  Q
    |||||||||    
T  40645062 tgtcaataa 40645054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 11364392 - 11364499
Alignment:
Q  135 atttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaatttaatta 234  Q
    |||||||||||| ||  || ||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  11364392 atttttggagacgaaactccgtttattgatgatgaaatgacaaaagttcaagaacgctgtgcaagtttgattttggaaaga-gttgatgtaatttaatta 11364490  T
Q  235 tgtcaataa 243  Q
    |||||||||    
T  11364491 tgtcaataa 11364499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 45850500 - 45850607
Alignment:
Q  135 atttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaatttaatta 234  Q
    ||||||||||| |||  || |||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  45850500 atttttggagataaaactccgtttaccgatgatgaaatgacaaaagttcaagaacgctgtgcaagtttaattttggaaaga-gttgatgtaatttaatta 45850598  T
Q  235 tgtcaataa 243  Q
    |||||||||    
T  45850599 tgtcaataa 45850607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 45850429 - 45850478
Alignment:
Q  70 tgtgtttcttatgtttttttaaagttaatttgatattataatatgttatc 119  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  45850429 tgtgtttctaatgtttttttaaagttaatttcatattctaatatgttatc 45850478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 40645267 - 40645186
Alignment:
Q  41 atatggtgtgtaattaaatattacaataat--gtgtttctta-tgtttttttaaagttaatttgatattataatatgttatc 119  Q
    ||||||||||||| ||||||||||||  ||  |||||||||| | |||||||||||||||||  ||||| ||||||||||||    
T  40645267 atatggtgtgtaactaaatattacaaccatttgtgtttcttaatatttttttaaagttaattccatattctaatatgttatc 40645186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 20591686 - 20591434
Alignment:
Q  1 tatgttgaacattgta-cagctggtattgtagacttatgggatatggtgtgtaattaaatattacaataat--gtgtttcttatgttttttt-aaagtta 96  Q
    ||||||||||||| || ||||||| |||   |||| |||| ||||||||||||| ||||||||||||  ||  ||||||||||| ||||||| |||||||    
T  20591686 tatgttgaacattatatcagctggcattaccgactcatggaatatggtgtgtaactaaatattacaaccatttgtgtttcttattttttttttaaagtta 20591587  T
Q  97 atttgatattataatatgttatcannnnnnnnnn-------ccaaatttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaac 189  Q
    |||| ||||| ||||||||||||                  ||| |||||||||||| ||  || |||||||||||||||||||| ||| ||||||||||    
T  20591586 atttcatattctaatatgttatcttaacttcttctttttttccagatttttggagacgaaactccgtttactgatgatgaaatgacaaaagttcaagaac 20591487  T
Q  190 gctgtgcaagtttgattttggaaagactttgatgtaatttaattatgtcaataa 243  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  20591486 gctgtgcaagtttgattttggaaaga-gttgatgtaatttaattatgtcaataa 20591434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 3571525 - 3571632
Alignment:
Q  135 atttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaatttaatta 234  Q
    |||||||||||| ||  ||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  3571525 atttttggagacgaaactctgtttactgatgatgaaatgacaaaagttcaagaacgctgtgcaattttgattttggaaaga-gttgatgtaatttaatta 3571623  T
Q  235 tgtcaataa 243  Q
    |||||||||    
T  3571624 tgtcaataa 3571632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 3571423 - 3571503
Alignment:
Q  41 atatggtgtgtaattaaatattacaataat--gtgtttcttatgtttttttaaagttaatttgatattataatatgttatc 119  Q
    ||||||||||||| ||||||||||||  ||  ||||||||||   ||||||||||||||||| ||||| ||||||| ||||    
T  3571423 atatggtgtgtaactaaatattacaaccatttgtgtttcttaatgttttttaaagttaatttcatattctaatatgatatc 3571503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 2889835 - 2889882
Alignment:
Q  165 gatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaa 212  Q
    |||||| | ||||||||||||||||||||||||| ||||||| |||||    
T  2889835 gatgaagttaaaaatgttcaagaacgctgtgcaaatttgattctggaa 2889882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 40011064 - 40011130
Alignment:
Q  155 gtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttga 221  Q
    |||||| | ||||||||| | ||||||| ||||| | ||||||||||||||| | ||||||||||||    
T  40011064 gtttacaggtgatgaaattacaaatgtttaagaaagttgtgcaagtttgattcttgaaagactttga 40011130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 34504062 - 34504169
Alignment:
Q  135 atttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaatttaatta 234  Q
    |||||||||||| ||  || ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  34504062 atttttggagacgaaactccgttaactgatgatgaaatgacaaaagttcaagaacgctgtgcaagtttgattttggaaaga-gttgatgtaatttaatta 34504160  T
Q  235 tgtcaataa 243  Q
    |||||||||    
T  34504161 tgtcaataa 34504169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 34503947 - 34504038
Alignment:
Q  31 gacttatgggatatggtgtgtaattaaatattacaataat--gtgtttctta-tgtttttttaaagttaatttgatattataatatgttatc 119  Q
    |||| |||| ||||||||| ||| ||||||||||||  ||  |||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  34503947 gactcatggaatatggtgtataactaaatattacaaccatttgtgtttcttaatgtttttttaaagttaatttcatattctaatatgttatc 34504038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 9102653 - 9102407
Alignment:
Q  1 tatgttgaacattgta-cagctggtattgtagacttatgggatatggtgtgtaattaaatattacaataat--gtgtttcttatgtttttttaaagttaa 97  Q
    |||||||||||||||| ||||||| |||   |||| |||| ||||||||||||| ||||||||||||  ||  |||||| | ||||||||||||||||||    
T  9102653 tatgttgaacattgtatcagctggcattaccgactcatggaatatggtgtgtaactaaatattacaaccatttgtgtttttaatgtttttttaaagttaa 9102554  T
Q  98 tttgatattataatatgttatcannnnnnnnnn---------ccaaatttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaa 188  Q
    ||| ||||| |||||||||||                     ||| |||||||||||| ||  || |||||||||||||||||||| ||| |||||||||    
T  9102553 tttcatattctaatatgttatattaacttcttttttttttatccagatttttggagacgaaactccgtttactgatgatgaaatgacaaaagttcaagaa 9102454  T
Q  189 cgctgtgcaagtttgattttggaaagactttgatgtaatttaattatg 236  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||    
T  9102453 cgctgtgcaagtttgattttggaaa-acgttgatgtaatttaattatg 9102407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 17388530 - 17388452
Alignment:
Q  152 tctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaattta 230  Q
    ||||||||||||||||||||| |  |||||||||||||||| ||||||||||||| | |||||| ||||||||||||||    
T  17388530 tctgtttactgatgatgaaattatgaatgttcaagaacgctatgcaagtttgattcttgaaagattttgatgtaattta 17388452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 17034023 - 17034117
Alignment:
Q  136 tttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaattta 230  Q
    |||||||||||||| |   ||||||| || || |||| |  |||||||||||||| |||| |||||||||| | |||||||||||| ||||||||    
T  17034023 tttttggagacaaaaacacgtttacttataataaaattatgaatgttcaagaacgttgtgtaagtttgattcttgaaagactttgacgtaattta 17034117  T

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Target: scaffold0462 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 12226 - 11980
Alignment:
Q  1 tatgttgaacattgta-cagctggtattgtagacttatgggatatggtgtgtaattaaatattacaataat--gtgtttctta-tgtttttttaaagtta 96  Q
    |||| ||||||||||| ||||||| |||   |||| |||| ||||||||||||| ||||||||||||  ||  |||||||||| ||||||||||||||||    
T  12226 tatgctgaacattgtatcagctggcattaccgactcatggaatatggtgtgtaactaaatattacaaccatttgtgtttcttaatgtttttttaaagtta 12127  T
Q  97 atttgatattataatatgtta--------tcannnnnnnnnnccaaatttttggagacaaagatctgtttactgatgatgaaatgaaaaatgttcaagaa 188  Q
    |||| ||||| ||||||||||        ||            || |||||||||||| ||  || |||||||||||||||||||| ||| |||||||||    
T  12126 atttcatattctaatatgttatcttaacttctttttttttcttcagatttttggagacgaaactccgtttactgatgatgaaatgacaaaagttcaagaa 12027  T
Q  189 cgctgtgcaagtttgattttggaaagactttgatgtaatttaattatg 236  Q
    |||||||||| ||| || ||||||| |  |||||||||||||||||||    
T  12026 cgctgtgcaaattttatattggaaa-aagttgatgtaatttaattatg 11980  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 28841585 - 28841646
Alignment:
Q  176 aaatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaatttaattatgt 237  Q
    ||||||||||||||| |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  28841585 aaatgttcaagaacgttgtgcaagtttgatttttaaaatactttgatgtaatttgattatgt 28841646  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 16182214 - 16182167
Alignment:
Q  165 gatgaaatgaaaaatgttcaagaacgctgtgcaagtttgattttggaa 212  Q
    |||||| | ||||||||||||||||||||||||| ||||||| |||||    
T  16182214 gatgaagttaaaaatgttcaagaacgctgtgcaaatttgattctggaa 16182167  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 20789763 - 20789823
Alignment:
Q  177 aatgttcaagaacgctgtgcaagtttgattttggaaagactttgatgtaatttaattatgt 237  Q
    |||||||||||||| ||||| | ||||||| | |||| ||||||||||||||| |||||||    
T  20789763 aatgttcaagaacgttgtgcgattttgattcttgaaatactttgatgtaatttgattatgt 20789823  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 5705585 - 5705544
Alignment:
Q  165 gatgaaatgaaaaatgttcaagaacgctgtgcaagtttgatt 206  Q
    |||||| | ||||||||||||||||||||||||| |||||||    
T  5705585 gatgaagttaaaaatgttcaagaacgctgtgcaaatttgatt 5705544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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