View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_high_40 (Length: 249)
Name: NF1709_high_40
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 42217072 - 42216825
Alignment:
| Q |
1 |
ttatttatcaggtcaaaccctaaaccctataactcattctttccccctttttatttttagtcaacttgaatcgccccatgatctaaagctttgtttttt- |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42217072 |
ttatttatcaggtcaaaccctaaaccctataactcattctttccccctttttatttttagtcaacttgaatcgccccatgatgtaaagctttgttttttt |
42216973 |
T |
|
| Q |
100 |
agcttaataattcaactgggtatctatgatatattgattttgatctattgcatattcaaatgctaactttgttttacattttttattatttcagttaatg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42216972 |
agcttaataattcaactgggtatctatgatatattgattttgatctattgcatattcaaatgctaactttgttttacattttttattatttcagttaatg |
42216873 |
T |
|
| Q |
200 |
tgcttggcagaccttgaatttgattatataaatccctatgtttctgca |
247 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
42216872 |
tgcttggcagaccttgaatttgattatataaatccttatgattctgca |
42216825 |
T |
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