View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709_high_41 (Length: 249)

Name: NF1709_high_41
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709_high_41
NF1709_high_41
[»] chr7 (3 HSPs)
chr7 (64-129)||(38551421-38551486)
chr7 (184-242)||(38551541-38551599)
chr7 (1-61)||(38551193-38551253)


Alignment Details
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 38551421 - 38551486
Alignment:
Q  64 aataaactatgtgtttctgtcttccatgcaacataatgtttgattcaataataatacaatgtcatg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551421 aataaactatgtgtttctgtcttccatgcaacataatgtttgattcaataataatacaatgtcatg 38551486  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 38551541 - 38551599
Alignment:
Q  184 gagttacggacggtgtacggatattcaaccaaacttcagagcaacactaacctatgcta 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551541 gagttacggacggtgtacggatattcaaccaaacttcagagcaacactaacctatgcta 38551599  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 38551193 - 38551253
Alignment:
Q  1 acagccatgcctgtatttcaagtcaatactcggccatttgcattcatatttatttccatga 61  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38551193 acagccatgcttgtatttcaagtcaatactcggtcatttgcattcatatttatttccatga 38551253  T

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