View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_high_49 (Length: 237)
Name: NF1709_high_49
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_high_49 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 32940550 - 32940347
Alignment:
| Q |
4 |
taagttctgatcaaaatgataaacatggacactggtaccattgctaccagcatcaaagacgacagcgtacgaggttagattttcttgttttgggaatctc |
103 |
Q |
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| T |
32940550 |
taagttctgatcaaaatggtagacatgaacacggctaccggtgctaccagcatcaaagacgacagcgtacgaggttagagtttcttgttttggaaatatt |
32940451 |
T |
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| Q |
104 |
ttacgattggtgagtgtattgttttcaagatattgggaggaagagattgtaggcattaagaaaactagaaatgtgacgagtttaattagaaactccatgc |
203 |
Q |
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| T |
32940450 |
ttacgattggtgagtatattgtttccaagatattgggaggaagagattgtaggcatcaagaagagtagaaatgtgatgagtttaattagaaactccatgc |
32940351 |
T |
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| Q |
204 |
ttgt |
207 |
Q |
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|||| |
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| T |
32940350 |
ttgt |
32940347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 32932322 - 32932164
Alignment:
| Q |
4 |
taagttctgatcaaaatgataaacatggacactggtaccattgctaccagcatcaaagacgacagcgtacgaggttagattttcttgttttgggaatctc |
103 |
Q |
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||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||| | ||||||||| || |||| ||||||||||| |||| || |
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| T |
32932322 |
taagttctggtcaaaatggtaaacatggacacgagtaccagtgctaccagcatcaaatatgacagcgtaagatgttaaggtttcttgtttttggaaaatc |
32932223 |
T |
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| Q |
104 |
ttacgattggtgagtgtattgttttcaagatattgggaggaagagattgtaggcattaa |
162 |
Q |
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| T |
32932222 |
tttcgattagtgagtaggttgtttcctaaatattgggaggaagtgattgcaggcattaa |
32932164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 32910470 - 32910312
Alignment:
| Q |
4 |
taagttctgatcaaaatgataaacatggacactggtaccattgctaccagcatcaaagacgacagcgtacgaggttagattttcttgttttgggaatctc |
103 |
Q |
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|||||||||||||||||| |||||||| | || | ||||| |||||||||||||||| |||||||| || |||| | ||||||||||| |||| || |
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| T |
32910470 |
taagttctgatcaaaatggtaaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataagaggaaattgtttcttgtttttggaaaatc |
32910371 |
T |
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| Q |
104 |
ttacgattggtgagtgtattgttttcaagatattgggaggaagagattgtaggcattaa |
162 |
Q |
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|| ||||| |||||| |||||| | | |||||| ||||||| ||||| ||||||||| |
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| T |
32910370 |
tttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggcattaa |
32910312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 32921862 - 32921676
Alignment:
| Q |
1 |
atttaagttctgatcaaaatgataaacatggacactggtaccattgctaccagcatcaaagacgacagcgtacgaggttagattttcttgttttgggaat |
100 |
Q |
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||||||||| ||||||||||| ||||||||||||| | | ||| |||||||||||||||| || ||||| || |||| | ||||||||||||||| |
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| T |
32921862 |
atttaagttttgatcaaaatggtaaacatggacacggcttccagtgctaccagcatcaaacacaacagcataagaggaaattggttcttgttttgggaaa |
32921763 |
T |
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| Q |
101 |
ctcttacgattggtgag---tgtattgttttcaagatattgggaggaagagattgtaggcattaagaaaactagaaatgtgacgagt |
184 |
Q |
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| T |
32921762 |
atcttacggttagtgagtaatatgttgtttccaagatattgggagtaagaaattgaaggcataatgaagagaagaaatgtgatgagt |
32921676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 32897517 - 32897465
Alignment:
| Q |
8 |
ttctgatcaaaatgataaacatggacactggtaccattgctaccagcatcaaa |
60 |
Q |
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||||||||||||||| ||||||| |||| | ||||| ||||||||||||||| |
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| T |
32897517 |
ttctgatcaaaatgaaaaacatgaacacggctaccagagctaccagcatcaaa |
32897465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 11822382 - 11822196
Alignment:
| Q |
1 |
atttaagttctgatcaaaatgataaacatggacactggtaccattgctaccagcatcaaagacgacagcgtacgaggttagattttcttgttttgggaat |
100 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||| | | ||| |||||||||||||||| || |||||||| |||| | |||||||||||||||| |
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| T |
11822382 |
atttaagttttgatcaaaatggtaaacatggacacggcttccagtgctaccagcatcaaacacaacagcgtaagaggaaattgtttcttgttttgggaaa |
11822283 |
T |
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| Q |
101 |
ctcttacgattggtgagtg---tattgttttcaagatattgggaggaagagattgtaggcattaagaaaactagaaatgtgacgagt |
184 |
Q |
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||||||| || |||||| | |||||| |||||| ||||||| |||| || | |||||||| ||| | ||||||||||| |||| |
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| T |
11822282 |
atcttacggttagtgagtaatatgttgtttccaagattttgggagtaagaaatggaaggcattatgaagagtagaaatgtgatgagt |
11822196 |
T |
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