View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_high_50 (Length: 237)
Name: NF1709_high_50
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_high_50 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: scaffold0929 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 2312 - 2171
Alignment:
| Q |
1 |
ataatgattgtgtgcattggtgcttgcctggacctattgacacatggagtgatttcttgttagatatgttgaagatgg----agggtgagatcagctgaa |
96 |
Q |
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| T |
2312 |
ataatgattgtgtgcattggtgcttgcctggacctattgacacatggagtgatttcttgttagatatgttgaagatggagggagggtgagatcagctgaa |
2213 |
T |
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| Q |
97 |
gaaaaaagacttcatttgcacaaaaattaacaaatgaaatag |
138 |
Q |
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| T |
2212 |
gaaaaaagacttcatttgcacaaaaattgacaaatgaaatag |
2171 |
T |
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Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 6364253 - 6364115
Alignment:
| Q |
1 |
ataatgattgtgtgcattggtgcttgcctggacctattgacacatggagtgatttcttgttagatatgttgaagatggagg--gtgagatcagctgaaga |
98 |
Q |
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| T |
6364253 |
ataatgattgtgtgcattggtgcttgcctggacctattgacacatggagtgatttcttgttagatatgttgaagatggagggtgtgagatcagcagaaga |
6364154 |
T |
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| Q |
99 |
aaaaagacttcatttgcacaaaaattaacaaatgaaata |
137 |
Q |
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| T |
6364153 |
aagaagacttcatttgcacacaaattgacaaatgaaata |
6364115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 6554226 - 6554147
Alignment:
| Q |
1 |
ataatgattgtgtgcattggtgcttgcctggacctattgacacatggagtgatttcttgttagatatgttgaagatggag |
80 |
Q |
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| T |
6554226 |
ataatgattgtgttcattggtgtttgccagggcctatagatacatggagtgatttcttgctagaaatgttgaagatggag |
6554147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 6543709 - 6543639
Alignment:
| Q |
3 |
aatgattgtgtgcattggtgcttgcctggacctattgacacatggagtgatttcttgttagatatgttgaa |
73 |
Q |
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| T |
6543709 |
aatgattgtgttcattggtgtttacctggacctgttgatacatggaatgagttattgctatatatgttgaa |
6543639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 15256740 - 15256695
Alignment:
| Q |
3 |
aatgattgtgtgcattggtgcttgcctggacctattgacacatgga |
48 |
Q |
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| T |
15256740 |
aatgattgtgttcattggtgtttgcctggacctatagacacatgga |
15256695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 15265265 - 15265220
Alignment:
| Q |
3 |
aatgattgtgtgcattggtgcttgcctggacctattgacacatgga |
48 |
Q |
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| T |
15265265 |
aatgattgtgttcattggtgtttgcctggaccaattgatacatgga |
15265220 |
T |
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