View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_high_56 (Length: 225)
Name: NF1709_high_56
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_high_56 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6371009 - 6371227
Alignment:
| Q |
1 |
cttccttttcagcaattttgaactcttccaattgaatcatatacaactctaaattaaatccctctaattgtgtttcattgcttctaaatggcttagttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6371009 |
cttccttttcagcaattttgaactcttccaattgaatcatatacaactctaaattaaatccctctaattgtgtttcattgcttctaaatggcttagttct |
6371108 |
T |
|
| Q |
101 |
aacacaattcccaccttgattccataacccattttcaaaatgtgatggtgaaagtgtcctaagaaatgttatgcccttaaaattctttaaattattgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6371109 |
aacacaattcccaccttgattccataacccattttcaaaatgtgatggtgaaagtgtcctaagaaatgttatgcccttaaaattctttaaattattgatg |
6371208 |
T |
|
| Q |
201 |
gctttaaatgcagtcctaa |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
6371209 |
gctttaaatgcagtcctaa |
6371227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6364368 - 6364586
Alignment:
| Q |
1 |
cttccttttcagcaattttgaactcttccaattgaatcatatacaactctaaattaaatccctctaattgtgtttcattgcttctaaatggcttagttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6364368 |
cttccttttcagcaattttgaactcttccaattgaatcatataaaactctaaattaaatccctctaattgtgtttcattgcttctaaatggcttagttct |
6364467 |
T |
|
| Q |
101 |
aacacaattcccaccttgattccataacccattttcaaaatgtgatggtgaaagtgtcctaagaaatgttatgcccttaaaattctttaaattattgatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
6364468 |
aacacaattcccaccttgattccataacccattttcaaaatgtgagggtgaaaatgtcctaagaaatgttatgcccttaaaattctgtaaattatttatg |
6364567 |
T |
|
| Q |
201 |
gctttaaatgcagtcctaa |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
6364568 |
gctttaaatgcagtcctaa |
6364586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 6554425 - 6554559
Alignment:
| Q |
85 |
taaatggcttagttctaacacaattcccaccttgattccataacccattttcaaaatgtgatggtgaaagtgtcctaagaaatgttatgcccttaaaatt |
184 |
Q |
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||||||||||||| || | ||||||||||||||| ||||||| ||||| |||||||||||||||| || ||||||||||||||| | ||||||||||| |
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| T |
6554425 |
taaatggcttagtccttaaacaattcccaccttggttccatataccattctcaaaatgtgatggtgcaaatgtcctaagaaatgtcacacccttaaaatt |
6554524 |
T |
|
| Q |
185 |
ctttaaattattgatggctttaaatgcagtcctaa |
219 |
Q |
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| ||| |||| | |||| ||||||||||||||| |
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|
| T |
6554525 |
ttctaagctatttaaggctctaaatgcagtcctaa |
6554559 |
T |
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