View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_high_59 (Length: 220)
Name: NF1709_high_59
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_high_59 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 32566846 - 32566652
Alignment:
| Q |
1 |
taattttctaaggtgttgctttcaagcagcaccattggtttctttttccatggttacctgtttcagggcttgtgttttctatgaaattcatttctcttag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32566846 |
taattttctaaggtgttgctttcaagcagcaccattggtttctttgtccatggttacctgtttcagtgcttgtgttttctatgaaattcatttctcttag |
32566747 |
T |
|
| Q |
101 |
ccatcaactgattgaaaattaaggcatgccttttaatctttcnnnnnnncctaccctcctaagggggtcattacttctttggtagctcaatacatg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32566746 |
ccatcaactgattgaaaattaaggcatgccttttaatctttctttttttcctaccctcctaa-tgggtcattacttctttggtagctcaatacatg |
32566652 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 1756901 - 1756937
Alignment:
| Q |
21 |
ttcaagcagcaccattggtttctttttccatggttac |
57 |
Q |
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| T |
1756901 |
ttcaagcagcaccattggtttctttatccatggttac |
1756937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 13219462 - 13219494
Alignment:
| Q |
164 |
ggggtcattacttctttggtagctcaatacatg |
196 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
13219462 |
ggggtcattacttctttggtagctcaacacatg |
13219494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 10996375 - 10996407
Alignment:
| Q |
164 |
ggggtcattacttctttggtagctcaatacatg |
196 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
10996375 |
ggggtcattacttctttggtagctcaacacatg |
10996407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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