View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_high_9 (Length: 489)
Name: NF1709_high_9
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 31240866 - 31241125
Alignment:
| Q |
18 |
atattgctccacaatttgatcacctataattaagttcatattaacattaatttcattgtagaataaaatgtaattaattatttgtcaaattcataattta |
117 |
Q |
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| T |
31240866 |
atattgctccacaatttgatcacctataattaagttcatattaacattaatttcattgtagaataaaatgtaattaattatttgtcaaattcataattta |
31240965 |
T |
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| Q |
118 |
aagtttttaagatacttgataaaatggaactatatatacaagctagttgatannnnnnnagaataatatctaatagttttgtatgagatttgtattcatt |
217 |
Q |
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| T |
31240966 |
aagtttttaagatacttgataaaatggaactatatatacaagctagttgatatttttttagaataatatctaatagttttgtatgagatttgtattcatt |
31241065 |
T |
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| Q |
218 |
caccactcttaacatgaatttgttttttgcacag-gttgaattagatttggatttgctgc |
276 |
Q |
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| T |
31241066 |
caccactcttaacatgaatttgttttttgcacagatttgtatgagatttggattcgctgc |
31241125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 31231661 - 31231997
Alignment:
| Q |
18 |
atattgctccacaatttgatcacctataattaagttcatattaacattaatttcattgtagaataaaatgtaattaattatttgtcaaattcataattta |
117 |
Q |
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| T |
31231661 |
atattgctccacagtttgatcacctataattaagttcacattaacattaattttattttagattaaaatgtaattaactatatttcaaattcataattta |
31231760 |
T |
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| Q |
118 |
aagtttttaagatacttgataaaatggaactatatatacaagctagttgatannnnnnnagaataatatctaatagttttgtatgagatttgtattcatt |
217 |
Q |
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| T |
31231761 |
aagtttttgagatacttaataaaatggaacaatatatacattctagttgatatttttttagattaatatctactagttttgtatgagatttgtattcatt |
31231860 |
T |
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| Q |
218 |
caccactcttaacatgaatttgttttttgcacag-gttgaattagatttggatttgctgcgatcgacaaattcacacattcaacatattggtcacatcgg |
316 |
Q |
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| T |
31231861 |
caccactcttaacatgaatttgttttttgcacagatttgtatgagatttggattcgctgcaatcgataaattcacacattcaacatactggtcataacgg |
31231960 |
T |
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| Q |
317 |
ttaagattaaattgagatcagatgatcgattaaaatt |
353 |
Q |
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| T |
31231961 |
ttaaggttgaattgagatcagacgatcgattaaaatt |
31231997 |
T |
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