View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_11 (Length: 443)
Name: NF1709_low_11
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 372274 - 372705
Alignment:
| Q |
1 |
agagatggttcagaaattggccctaagattgaatacgaaaaaatcagttataaatttctatgattcatatgtaaatgtaagagaaaggtaagcactgacc |
100 |
Q |
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| T |
372274 |
agagatggttcagaaattggccctgagattgagtacgaaaaaatcagttataaatttatatgattcatatgtaaatgtaagagaaaggtaagcactgacc |
372373 |
T |
|
| Q |
101 |
tccatgaacttgtccatctgaggcaccaccttgagaagcatctggagttggtggtctagctggttgagttnnnnnnntttcagcatggatctcaggaatc |
200 |
Q |
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| T |
372374 |
tccatgaacttgtccatctgaggcaccaccttgagaagcatctggagttggtggtctagctggttgagttgggggggtttcagcatggatctcaggaatc |
372473 |
T |
|
| Q |
201 |
atttcaggagtctgatccttttgatgaacagttatatcgatatccatatctgttggaatattttcaacagcatcattggaaggatcacgaagactttctg |
300 |
Q |
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| T |
372474 |
atttcaggagtctgatccttttcatgaacagttatatcgatatccatatctgttggaatattttcaacagcatcattggaaggatcacgaagactttccg |
372573 |
T |
|
| Q |
301 |
gtggcaatgtctgttttgtaacgggatcctgaaagatatgattgttatcatcactagtatgactggtagtatgtgactctatatgggaacttggaccacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
372574 |
gtggcaatgtctgttttgtaacgggatcctgaaagatatgattgttatcatcactagtatgactggtagtatgtgactctatatgggaacttggaccacc |
372673 |
T |
|
| Q |
401 |
attttgaacatccactacccttgtcgatgatg |
432 |
Q |
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|| |||||||||||||||||||||||| |||| |
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| T |
372674 |
atcttgaacatccactacccttgtcgacgatg |
372705 |
T |
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