View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_12 (Length: 433)
Name: NF1709_low_12
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Original strand, 35170292 - 35170705
Alignment:
| Q |
7 |
gttcagtctgcttctgctttttgtcttgctggtattgtacaaaacacgcggaatcctcctgtttcggttttgtatggtatgttgattaggattcttaagt |
106 |
Q |
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| T |
35170292 |
gttcagtctgcttctgctttttgtcttgctggtattgtacaaaacacgcggaatcctcctgtttcggttttgtatggtatgttgattaggattcttaagt |
35170391 |
T |
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| Q |
107 |
tgcttaagaatccacattttatggcgaaacctgcgttgattgagttgaataggtgtattattcaggctggtggagcttcgacgcagagtgttcttttgac |
206 |
Q |
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| T |
35170392 |
tgcttaagaatccacattttatggcgaaacctgcgttgattgagttgaataggtgtattattcaggctggtggagcttcgacgcagagtgttcttttgac |
35170491 |
T |
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| Q |
207 |
ggctgttggtagtattggagagggtttgaatgatacggattggaaaacacgtaaagcggcttccgttgcgttgggacaaattgctttgactcgtgcttcg |
306 |
Q |
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| T |
35170492 |
tgctgttggtagtattagagagggtttgaatgatacggattggaaaacacgtaaagcggcttccgttgcgttgggacaaattgctttgactcgtgcttcg |
35170591 |
T |
|
| Q |
307 |
ttcttgtcgtctttgagggcttcttgtattcattctcttgattcatcgaggtttgataaggtggttacccactctctgtttttgacattattagtattgc |
406 |
Q |
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| T |
35170592 |
ttcttgtcgtctttgagggcttcttgtattcattctcttgattcatcgaggtttgataaggtggttactcactctctgtttttgacattattagtattgc |
35170691 |
T |
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| Q |
407 |
atttctcaatattc |
420 |
Q |
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| T |
35170692 |
atttctcaatattc |
35170705 |
T |
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