View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_17 (Length: 387)
Name: NF1709_low_17
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 46 - 371
Target Start/End: Original strand, 2467434 - 2467764
Alignment:
| Q |
46 |
gcttgagtaaacaatcggatgaccgttgttggtggtttaaattatttgatttctatgacggcttttaggcacatgtttagttaataattaatataaatag |
145 |
Q |
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| T |
2467434 |
gcttgagtaaacaatcggatgaccgttgttggtggtttaaattatttgatttctatgacggcttttaggcacatgtttagttaataattaatataaatag |
2467533 |
T |
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| Q |
146 |
tacgaatttaaatcaaataactaaggcaaattgcaaatttagttggggttagcagtcaattgaaatgggattatctcatgaacattcgtggacgcaaaaa |
245 |
Q |
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| T |
2467534 |
tacgaatttaaatcaaataactaaggcaaattgcaaatttagttggggttagcagtcaattgaaatgggattatctcatgaacattcgtggacgcaaaaa |
2467633 |
T |
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| Q |
246 |
caaaaac-----ctttaagcacaagttattaaacgaatggaagcataaatagagtaattgtattcaaacaacccaatgtattgcataatttaagaagttc |
340 |
Q |
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| T |
2467634 |
aaaaaaaaaaaactttaagcacaagttattaaacgaatggaagcataaatagagtaattgtattcaaacaaaccaatgtattgcataatttaagaagttc |
2467733 |
T |
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| Q |
341 |
caaagaacttccaatacttaaggtaatcaaa |
371 |
Q |
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| T |
2467734 |
caaagaagttccaatacttaaggtaatcaaa |
2467764 |
T |
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