View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709_low_19 (Length: 345)

Name: NF1709_low_19
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709_low_19
NF1709_low_19
[»] chr1 (6 HSPs)
chr1 (87-324)||(15799293-15799517)
chr1 (15-80)||(6138118-6138183)
chr1 (8-80)||(52022033-52022104)
chr1 (10-80)||(6139724-6139794)
chr1 (92-177)||(15510198-15510283)
chr1 (19-80)||(2595451-2595512)
[»] chr5 (8 HSPs)
chr5 (8-80)||(35430047-35430119)
chr5 (10-75)||(13661630-13661695)
chr5 (8-80)||(35428467-35428537)
chr5 (8-75)||(7400609-7400675)
chr5 (8-80)||(41340946-41341018)
chr5 (19-80)||(18009106-18009167)
chr5 (19-75)||(30921767-30921822)
chr5 (19-80)||(7658881-7658943)
[»] chr8 (3 HSPs)
chr8 (8-75)||(392450-392517)
chr8 (26-80)||(3581328-3581382)
chr8 (19-80)||(7278202-7278263)
[»] chr6 (5 HSPs)
chr6 (8-80)||(14763970-14764042)
chr6 (7-80)||(14766546-14766619)
chr6 (20-70)||(20726687-20726737)
chr6 (8-84)||(21118571-21118643)
chr6 (19-73)||(32342000-32342055)
[»] chr3 (5 HSPs)
chr3 (16-80)||(38183255-38183319)
chr3 (22-73)||(3372285-3372336)
chr3 (23-80)||(16869899-16869955)
chr3 (19-80)||(44081190-44081251)
chr3 (21-74)||(3371323-3371376)
[»] chr7 (4 HSPs)
chr7 (19-80)||(15589939-15590000)
chr7 (10-80)||(5439995-5440065)
chr7 (10-80)||(5449005-5449075)
chr7 (19-80)||(15588804-15588865)
[»] chr4 (4 HSPs)
chr4 (8-80)||(45676759-45676830)
chr4 (16-80)||(10550136-10550200)
chr4 (19-77)||(41848495-41848553)
chr4 (19-80)||(31322485-31322546)
[»] chr2 (2 HSPs)
chr2 (19-80)||(31073833-31073894)
chr2 (19-80)||(4660257-4660318)


Alignment Details
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 87 - 324
Target Start/End: Complemental strand, 15799517 - 15799293
Alignment:
Q  87 tttgtagaaagac-tcctcagcatacttcctaagaaatgaaacacagcttctgtgtgttttcggtgcttcaaaggcctggaaaatgaaatgatgcactag 185  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||  || ||||||||||||||||||||||| ||| ||    
T  15799517 tttgtcgaaagacctcctcggcatacttcctaagaaatgaaacacagcttctgtgtgtttttggtaattaaaaggcctggaaaatgaaatgatacacaag 15799418  T
Q  186 gttaaaaa-caaaataccacaattaagggaactttatcaattgaaaatcaaagagca-aaaggtaattacaatgataaaaagcaagtgaaccacaacatg 283  Q
    |||||||| ||||||| |||     | |||||||||| ||| | | ||||||||||| | ||||||  || | || |           ||||||| ||||    
T  15799417 gttaaaaatcaaaataacac-----atggaactttataaatcggatatcaaagagcatataggtaaaaaccaagaaa-----------aaccacagcatg 15799334  T
Q  284 aaaaccatttggaaatttaataggaaagtatataccttatc 324  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  15799333 aaaaccatttgaaaatttaataggaaagtatataccttatc 15799293  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 6138183 - 6138118
Alignment:
Q  15 atcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  6138183 atcaccaataactaattttttctaacctccttctttattcaagaaacttgacaatcaaacccaaca 6138118  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 52022104 - 52022033
Alignment:
Q  8 ggacatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||||    
T  52022104 ggacataatcaccaataactaatatttt-taacctccttccttattcaagaaacttgacaatcaaacccaaca 52022033  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 6139794 - 6139724
Alignment:
Q  10 acatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  6139794 acataatcatcaataactaattttttctaacctccttctttattcaaaaaacttgacaatcaaacccaaca 6139724  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 15510198 - 15510283
Alignment:
Q  92 agaaagactcctcagcatacttcctaagaaatgaaacacagcttctgtgtgttttcggtgcttcaaaggcctggaaaatgaaatga 177  Q
    ||||||||||||| ||||||| ||||||||||| ||  ||||| ||||||||||  ||||  |||||||||||||||||| |||||    
T  15510198 agaaagactcctcggcatactgcctaagaaatggaaagcagctgctgtgtgtttctggtgactcaaaggcctggaaaatggaatga 15510283  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 2595451 - 2595512
Alignment:
Q  19 ccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||| |||||| ||| ||||||||||||||||  ||||||| ||||||||||||| ||||    
T  2595451 ccaatagctaatactttttaacctccttctttatataagaaacttgacaatcaaacccaaca 2595512  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 35430047 - 35430119
Alignment:
Q  8 ggacatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  35430047 ggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaaca 35430119  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 13661695 - 13661630
Alignment:
Q  10 acatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaacc 75  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  13661695 acataatcactaataactaatattttttaacctccttctttattcaagaaacttgacaatcaaacc 13661630  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 35428467 - 35428537
Alignment:
Q  8 ggacatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||| ||||    
T  35428467 ggacataatcaccaataactaatattttctaacctccttctttattca--aaacttgacaatcaaacccaaca 35428537  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 7400609 - 7400675
Alignment:
Q  8 ggacatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaacc 75  Q
    |||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||    
T  7400609 ggacataatcaccaataactaatatttt-taacctctttctttattcaagaaacttgacaatcaaacc 7400675  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 41341018 - 41340946
Alignment:
Q  8 ggacatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||| | ||||||||||||||||||| ||||||||||||||||||||||||  ||||||| ||||| ||||    
T  41341018 ggacataaccaccaataactaatattttataacctccttctttattcaagaaatttgacaattaaacctaaca 41340946  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 18009167 - 18009106
Alignment:
Q  19 ccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||| ||||    
T  18009167 ccaatagctaatattttttaacctccttctttatttaagaaacttgacaatcaaacccaaca 18009106  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 30921767 - 30921822
Alignment:
Q  19 ccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaacc 75  Q
    |||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||    
T  30921767 ccaatatctaatgtttt-taacctccttctttattcaagaaacttgacaatcaaacc 30921822  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 7658943 - 7658881
Alignment:
Q  19 ccaataactaatattttctaacctcc-ttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    ||||||||||||||||| |||||||| ||| ||||| || |||| ||||||||||||| ||||    
T  7658943 ccaataactaatattttttaacctcctttccttatttaaaaaacttgacaatcaaacccaaca 7658881  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 392450 - 392517
Alignment:
Q  8 ggacatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaacc 75  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  392450 ggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacc 392517  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 3581382 - 3581328
Alignment:
Q  26 ctaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||||||| ||||    
T  3581382 ctaatattttttaacctccttctttatttaagaaacttgacaatcaaacctaaca 3581328  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 7278202 - 7278263
Alignment:
Q  19 ccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||| | |||||||| |||||||||| |||||| ||||||| ||||||||||||| ||||    
T  7278202 ccaatagcaaatattttttaacctccttatttatttaagaaacttgacaatcaaacccaaca 7278263  T

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Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 14763970 - 14764042
Alignment:
Q  8 ggacatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  14763970 ggacataatcaccaataactaatattttctaacctccttctttattcaacaaacttgacaatcaaacccaaca 14764042  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 14766546 - 14766619
Alignment:
Q  7 tggacatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||    
T  14766546 tggacataatcaccaataactaatattttctaacctccttgtttattcaacaaacttgacaatcaaacccaaca 14766619  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 20726737 - 20726687
Alignment:
Q  20 caataactaatattttctaacctccttctttattcaagaaacatgacaatc 70  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  20726737 caataactaatattttttaacctccttctttattcaagaaacttgacaatc 20726687  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 21118571 - 21118643
Alignment:
Q  8 ggacatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaacagctg 84  Q
    |||||| ||||||||||||||||||||| | ||||||    ||||| ||||||  ||||||||||||| ||||||||    
T  21118571 ggacataatcaccaataactaatatttttttacctcc----ttatttaagaaaattgacaatcaaacccaacagctg 21118643  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 32342055 - 32342000
Alignment:
Q  19 ccaataactaatattttctaacctccttctttattc-aagaaacatgacaatcaaa 73  Q
    ||||||| ||||||||| ||||||| |||||||||| ||||||| |||||||||||    
T  32342055 ccaataattaatattttttaacctctttctttattcaaagaaacttgacaatcaaa 32342000  T

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Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 38183255 - 38183319
Alignment:
Q  16 tcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  38183255 tcaccaataactaatattttctaacctccttctttattcaagaaacttgacaatcaaacccaaca 38183319  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 3372336 - 3372285
Alignment:
Q  22 ataactaatattttctaacctccttctttattcaagaaacatgacaatcaaa 73  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  3372336 ataactaatattttttaacctccttctttattcaagaaacttgacaatcaaa 3372285  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 16869899 - 16869955
Alignment:
Q  23 taactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    ||||||||||||| ||||| ||||||||||||||||||| | ||||||||||| ||||    
T  16869899 taactaatatttt-taacccccttctttattcaagaaacttaacaatcaaacccaaca 16869955  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 44081251 - 44081190
Alignment:
Q  19 ccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||| |||||||||||| | ||||||||||||||||||||| | ||||||| ||||| ||||    
T  44081251 ccaagaactaatatttttttacctccttctttattcaagaaccttgacaattaaacccaaca 44081190  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 3371376 - 3371323
Alignment:
Q  21 aataactaatattttctaacctccttctttattcaagaaacatgacaatcaaac 74  Q
    ||||||||||||||| ||| ||| || |||||||||||||  ||||||||||||    
T  3371376 aataactaatattttttaaactctttttttattcaagaaatttgacaatcaaac 3371323  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 15589939 - 15590000
Alignment:
Q  19 ccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    ||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  15589939 ccaataactaatattttttaacctccttctttattcaagaaatttgacaatcaaaccaaaca 15590000  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 5439995 - 5440065
Alignment:
Q  10 acatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||| |||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||    
T  5439995 acataatcaccaatagctaatattttctaacatccttttttattcaagaaacttgacaatcaaacccaaca 5440065  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 5449005 - 5449075
Alignment:
Q  10 acatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||| |||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||    
T  5449005 acataatcaccaatagctaatattttctaacatccttttttattcaagaaacttgacaatcaaacccaaca 5449075  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 15588804 - 15588865
Alignment:
Q  19 ccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||    
T  15588804 ccaataactaatattttgtaacctccttctttattcaagaaacttgacaatcatacccaaca 15588865  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 45676759 - 45676830
Alignment:
Q  8 ggacatcatcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||    
T  45676759 ggacataatcaccaatagctaatatttt-taacctccttctttattcaagaaacttgacaatcaaacccaaca 45676830  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 10550136 - 10550200
Alignment:
Q  16 tcaccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||||| ||||    
T  10550136 tcaccaataactaatgttttttaacctcattctttattcaagaaacttgacaatcaaacccaaca 10550200  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 41848495 - 41848553
Alignment:
Q  19 ccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaa 77  Q
    |||||| |||||||||| ||||||||||||||||| ||||||| | |||||||||||||    
T  41848495 ccaatagctaatattttttaacctccttctttatttaagaaacttaacaatcaaaccaa 41848553  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 31322546 - 31322485
Alignment:
Q  19 ccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||| ||||||||||  |||||||||||||| | ||||||| ||||||||||||| ||||    
T  31322546 ccaatatctaatatttttaaacctccttctttaattaagaaacttgacaatcaaacctaaca 31322485  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 31073833 - 31073894
Alignment:
Q  19 ccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| ||||    
T  31073833 ccaataactaatattttttcacctccttctttattcaagaaacttgacaatcaaacccaaca 31073894  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 4660257 - 4660318
Alignment:
Q  19 ccaataactaatattttctaacctccttctttattcaagaaacatgacaatcaaaccaaaca 80  Q
    |||||| ||||||||||  || ||||||||||||| ||||||| ||||||||||||| ||||    
T  4660257 ccaatagctaatatttttcaatctccttctttatttaagaaacttgacaatcaaacccaaca 4660318  T

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