View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709_low_20 (Length: 337)

Name: NF1709_low_20
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709_low_20
NF1709_low_20
[»] chr8 (7 HSPs)
chr8 (3-333)||(28252216-28252557)
chr8 (1-54)||(16052402-16052455)
chr8 (7-54)||(24120174-24120221)
chr8 (4-42)||(11310341-11310379)
chr8 (4-54)||(22894659-22894709)
chr8 (6-54)||(12956431-12956479)
chr8 (6-54)||(14977232-14977280)
[»] chr6 (4 HSPs)
chr6 (1-54)||(30355263-30355316)
chr6 (1-44)||(12974275-12974318)
chr6 (3-44)||(15576297-15576338)
chr6 (4-44)||(16527836-16527876)
[»] chr5 (6 HSPs)
chr5 (4-54)||(17382160-17382210)
chr5 (3-56)||(17027466-17027519)
chr5 (4-54)||(24841693-24841743)
chr5 (4-54)||(25594817-25594867)
chr5 (3-56)||(11274454-11274506)
chr5 (10-54)||(30790727-30790771)
[»] chr4 (5 HSPs)
chr4 (4-54)||(12111455-12111505)
chr4 (7-54)||(5906845-5906893)
chr4 (4-54)||(15192143-15192193)
chr4 (4-44)||(10320354-10320394)
chr4 (12-44)||(34864426-34864458)
[»] chr2 (5 HSPs)
chr2 (1-54)||(21505264-21505317)
chr2 (4-54)||(28278548-28278597)
chr2 (1-38)||(18236443-18236480)
chr2 (8-54)||(32619586-32619632)
chr2 (8-44)||(19949690-19949725)
[»] chr1 (4 HSPs)
chr1 (1-54)||(23223348-23223401)
chr1 (1-54)||(25777956-25778009)
chr1 (4-44)||(30675423-30675463)
chr1 (4-44)||(12424050-12424089)
[»] scaffold0002 (1 HSPs)
scaffold0002 (4-44)||(446945-446984)
[»] chr7 (5 HSPs)
chr7 (3-54)||(29544458-29544509)
chr7 (4-56)||(7142038-7142090)
chr7 (8-44)||(21545933-21545969)
chr7 (3-47)||(22532775-22532819)
chr7 (3-43)||(23124840-23124880)
[»] chr3 (1 HSPs)
chr3 (97-160)||(26892085-26892148)
[»] scaffold0188 (1 HSPs)
scaffold0188 (5-54)||(27079-27128)
[»] scaffold0386 (2 HSPs)
scaffold0386 (7-47)||(8841-8881)
scaffold0386 (11-47)||(13203-13239)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 333
Target Start/End: Complemental strand, 28252557 - 28252216
Alignment:
Q  3 ggagcatcatatgatattttttgctatgtttttagtacttttattcgcatttaa----------gatgagagttagaagagatgtcaatgcagaatattt 92  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||          |||||||||||||||||||||||||||||||||||     
T  28252557 ggagcatcatatgatattttttgttatgtttttaatacttttattcgtatttaaagacaaataagatgagagttagaagagatgtcaatgcagaatattc 28252458  T
Q  93 catgataacttcaaattacttgcattgttgagactaattaaagatctcatgttgagacaaccttgatcaacaagtctacatatcttcttcaaagaaatta 192  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28252457 catgataacttcaaattacttgcattgttgagcctaattagagatctgatgttgagacaacctttatcaacaagtctacatatcttcttcaaagaaatta 28252358  T
Q  193 tagctatttttcatagcatatatgttgaataaatccttaagagaattcaaacctgagctttcttctttgtagtatatcatcaaatcatcaacataaaaag 292  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28252357 tagcaatttttcatagcatatatgttgaataaatccttaagagaattcaaacctgagctttcttctttgtagtatataatcaaatcatcaacataaaaag 28252258  T
Q  293 agagaga-atgtattgagatgttccttgtccctttgcttctc 333  Q
    ||||||| ||||||| |||||||||||||||||||| |||||    
T  28252257 agagagagatgtattcagatgttccttgtccctttgattctc 28252216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 16052455 - 16052402
Alignment:
Q  1 acggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  16052455 acggagcatcatatgatatttttggctatgtttttagtacttttatttgcattt 16052402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 24120174 - 24120221
Alignment:
Q  7 catcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||    
T  24120174 catcatatgatattttttgctatgtttttagtacttttctttgcattt 24120221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 11310379 - 11310341
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtactt 42  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11310379 gagcatcatatgatattttttgctatgtttttagtactt 11310341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 22894709 - 22894659
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||||||||| |||||| | |||||||||||||||||| |||||||||    
T  22894709 gagcatcatatgacatttttaggtatgtttttagtacttttcttcgcattt 22894659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 12956431 - 12956479
Alignment:
Q  6 gcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||| ||||||||||  ||||||||||||||||||| || ||||||    
T  12956431 gcatcatgtgatatttttgtctatgtttttagtacttttctttgcattt 12956479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 14977280 - 14977232
Alignment:
Q  6 gcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||||||||||||||  |||||||||||| |||||| || ||||||    
T  14977280 gcatcatatgatatttttaactatgtttttagcacttttctttgcattt 14977232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30355263 - 30355316
Alignment:
Q  1 acggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  30355263 acggagcatcatatgatatttttggctatgtttttagtacttttacttgcattt 30355316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12974275 - 12974318
Alignment:
Q  1 acggagcatcatatgatattttttgctatgtttttagtactttt 44  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  12974275 acggagcatcatatgatattttttgctatggttttagtactttt 12974318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 15576338 - 15576297
Alignment:
Q  3 ggagcatcatatgatattttttgctatgtttttagtactttt 44  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  15576338 ggagcatcatatgatatttttggctatgtttttagtactttt 15576297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 16527836 - 16527876
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtactttt 44  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  16527836 gagcatcatataatatttttggctatgtttttagtactttt 16527876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 17382210 - 17382160
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    |||||||||||||||||||||||||||| |||||||||||| || ||||||    
T  17382210 gagcatcatatgatattttttgctatgtgtttagtacttttttttgcattt 17382160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 17027466 - 17027519
Alignment:
Q  3 ggagcatcatatgatattttttgctatgtttttagtacttttattcgcatttaa 56  Q
    |||||||||||||| |||||| |||||||||||||||||||| || ||||||||    
T  17027466 ggagcatcatatgacatttttggctatgtttttagtacttttctttgcatttaa 17027519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 24841693 - 24841743
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||||||||| |||||||||||||||||||||||| || || ||||||    
T  24841693 gagcatcatatgacattttttgctatgtttttagtactattctttgcattt 24841743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 25594867 - 25594817
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    |||||||||||  ||||||| ||||||||||||||||||||||| ||||||    
T  25594867 gagcatcatatattatttttggctatgtttttagtacttttatttgcattt 25594817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 11274506 - 11274454
Alignment:
Q  3 ggagcatcatatgatattttttgctatgtttttagtacttttattcgcatttaa 56  Q
    |||||||||| |||||||||||||||| |||||||||||||| || ||||||||    
T  11274506 ggagcatcatttgatattttttgctat-tttttagtacttttctttgcatttaa 11274454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 30790727 - 30790771
Alignment:
Q  10 catatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||| |||||||||||||||||||||||  ||||||| ||||||    
T  30790727 catataatattttttgctatgtttttagttattttatttgcattt 30790771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 12111505 - 12111455
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  12111505 gagcatcatatgacattttttgttatgtttttagtacttttatttgcattt 12111455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 5906893 - 5906845
Alignment:
Q  7 catcatatgatat-tttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  5906893 catcatatgatatatttttgctatgtttttagtacttttatttgcattt 5906845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 15192143 - 15192193
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||||||||| |||||||| ||||||||| |||||||| || ||||||    
T  15192143 gagcatcatatgacattttttgttatgtttttcgtacttttctttgcattt 15192193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 10320394 - 10320354
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtactttt 44  Q
    ||||||||||||| |||||| ||||||||||||||| ||||    
T  10320394 gagcatcatatgacatttttcgctatgtttttagtaatttt 10320354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 34864458 - 34864426
Alignment:
Q  12 tatgatattttttgctatgtttttagtactttt 44  Q
    |||||||||||||| ||||||||||||||||||    
T  34864458 tatgatattttttgttatgtttttagtactttt 34864426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21505317 - 21505264
Alignment:
Q  1 acggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| || ||||||    
T  21505317 acggagcatcatatgatatttttggctatgtttttagtatttttctttgcattt 21505264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 28278597 - 28278548
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  28278597 gagcatcatatgatattttttgctatg-ttttagtacttttctttgcattt 28278548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18236480 - 18236443
Alignment:
Q  1 acggagcatcatatgatattttttgctatgtttttagt 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  18236480 acggagcatcatatgatattttatgctatgtttttagt 18236443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 32619586 - 32619632
Alignment:
Q  8 atcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    |||||||||||||||| ||||| |||||||||||||| || ||||||    
T  32619586 atcatatgatatttttggctatatttttagtacttttctttgcattt 32619632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 19949725 - 19949690
Alignment:
Q  8 atcatatgatattttttgctatgtttttagtactttt 44  Q
    ||||||||||||||||| |||||||||||||||||||    
T  19949725 atcatatgatatttttt-ctatgtttttagtactttt 19949690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23223348 - 23223401
Alignment:
Q  1 acggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||| || ||||||    
T  23223348 acggagcatcatatgatgtttttggctatgttttaagtacttttctttgcattt 23223401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25778009 - 25777956
Alignment:
Q  1 acggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    |||||| ||||||||||||||||||||||||| ||||| ||||| || ||||||    
T  25778009 acggagtatcatatgatattttttgctatgttcttagtgcttttctttgcattt 25777956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 30675423 - 30675463
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtactttt 44  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  30675423 gagcatcatatgacattttttgctatgtttttagaactttt 30675463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 12424089 - 12424050
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtactttt 44  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  12424089 gagcatcatatgatattttg-gctatgtttttagtactttt 12424050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 446945 - 446984
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtactttt 44  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  446945 gagcatcatatgatatttt-tgctatgtttttagtactttt 446984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 29544458 - 29544509
Alignment:
Q  3 ggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||||||||||||||||| |||||||||||| || |||| || ||||||    
T  29544458 ggagcatcatatgatatttttggctatgtttttattaattttctttgcattt 29544509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 7142038 - 7142090
Alignment:
Q  4 gagcatcatatgatattttttgctatgtttttagtacttttattcgcatttaa 56  Q
    ||||||||||||| |||||| |||||||||||| || |||| || ||||||||    
T  7142038 gagcatcatatgacatttttggctatgtttttaatagttttctttgcatttaa 7142090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 21545969 - 21545933
Alignment:
Q  8 atcatatgatattttttgctatgtttttagtactttt 44  Q
    ||||||||||||||||  |||||||||||||||||||    
T  21545969 atcatatgatatttttgactatgtttttagtactttt 21545933  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 22532819 - 22532775
Alignment:
Q  3 ggagcatcatatgatattttttgctatgtttttagtacttttatt 47  Q
    ||||||||||||||||||||  ||||||||||||||  |||||||    
T  22532819 ggagcatcatatgatattttaggctatgtttttagttattttatt 22532775  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 23124840 - 23124880
Alignment:
Q  3 ggagcatcatatgatattttttgctatgtttttagtacttt 43  Q
    |||||||||| ||| ||||||| ||||||||||||||||||    
T  23124840 ggagcatcatctgacattttttactatgtttttagtacttt 23124880  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 26892148 - 26892085
Alignment:
Q  97 ataacttcaaattacttgcattgttgagactaattaaagatctcatgttgagacaaccttgatc 160  Q
    |||| ||||||||| |||||||| ||| ||||||||||||| | |||||||| | |||||||||    
T  26892148 ataatttcaaattatttgcattgctgacactaattaaagatttgatgttgaggccaccttgatc 26892085  T

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Target: scaffold0188 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 27128 - 27079
Alignment:
Q  5 agcatcatatgatattttttgctatgtttttagtacttttattcgcattt 54  Q
    ||||||| ||||||||||  |||||||||||||||||||| || ||||||    
T  27128 agcatcacatgatattttcggctatgtttttagtacttttctttgcattt 27079  T

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Target: scaffold0386 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 8881 - 8841
Alignment:
Q  7 catcatatgatattttttgctatgtttttagtacttttatt 47  Q
    ||||||||||||||||| | ||| |||||||||||||||||    
T  8881 catcatatgatatttttggttatttttttagtacttttatt 8841  T

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Target: scaffold0386; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 13239 - 13203
Alignment:
Q  11 atatgatattttttgctatgtttttagtacttttatt 47  Q
    ||||||||||||| | |||||||||||||||||||||    
T  13239 atatgatatttttagttatgtttttagtacttttatt 13203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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